miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11661 3' -54 NC_003102.1 + 128727 0.66 0.965232
Target:  5'- cGGCGACGGCGUUGUUaauUCGACaaauUGAu -3'
miRNA:   3'- -UCGCUGUUGCAGCGGc--AGCUGcu--ACU- -5'
11661 3' -54 NC_003102.1 + 120005 0.66 0.965232
Target:  5'- cGGCuaaauACAACG-CuUCGUCGACGAUGGc -3'
miRNA:   3'- -UCGc----UGUUGCaGcGGCAGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 22930 0.66 0.965232
Target:  5'- -aCGAaAGCGUCGCCGcCGcCGAauUGAa -3'
miRNA:   3'- ucGCUgUUGCAGCGGCaGCuGCU--ACU- -5'
11661 3' -54 NC_003102.1 + 60202 0.66 0.961855
Target:  5'- cAGCGGCGGCG--GCgG-CGGCGAUGc -3'
miRNA:   3'- -UCGCUGUUGCagCGgCaGCUGCUACu -5'
11661 3' -54 NC_003102.1 + 119059 0.66 0.958256
Target:  5'- uAGCGAUAGuCGUCGUgaUCG-CGGUGGc -3'
miRNA:   3'- -UCGCUGUU-GCAGCGgcAGCuGCUACU- -5'
11661 3' -54 NC_003102.1 + 3970 0.66 0.958256
Target:  5'- cGCGACGuaucgaACGUCGCagaGguaUCGACGAa-- -3'
miRNA:   3'- uCGCUGU------UGCAGCGg--C---AGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 70246 0.66 0.958256
Target:  5'- ---aACGACGUCGCCGgUGACaAUGAc -3'
miRNA:   3'- ucgcUGUUGCAGCGGCaGCUGcUACU- -5'
11661 3' -54 NC_003102.1 + 15905 0.66 0.954431
Target:  5'- uAGUgGACAuguuCGUgGCCGauUCGAUGGUGGc -3'
miRNA:   3'- -UCG-CUGUu---GCAgCGGC--AGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 41474 0.66 0.952837
Target:  5'- uAGCGGCGGCGaggacaagauucgCGUCGUCGACu---- -3'
miRNA:   3'- -UCGCUGUUGCa------------GCGGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 119716 0.66 0.950376
Target:  5'- --aGACGACGaCGaCGaCGACGAUGAa -3'
miRNA:   3'- ucgCUGUUGCaGCgGCaGCUGCUACU- -5'
11661 3' -54 NC_003102.1 + 135091 0.66 0.950376
Target:  5'- gGGCGACGACGgcggugGCUGguUCGACGcguuUGAu -3'
miRNA:   3'- -UCGCUGUUGCag----CGGC--AGCUGCu---ACU- -5'
11661 3' -54 NC_003102.1 + 113736 0.67 0.946088
Target:  5'- gAGCGGCcgccACGUCGauuCgGUCGACGAc-- -3'
miRNA:   3'- -UCGCUGu---UGCAGC---GgCAGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 87673 0.67 0.941562
Target:  5'- uGcCGGCGACGaaGCCGUCucguucauuaGACGAUGc -3'
miRNA:   3'- uC-GCUGUUGCagCGGCAG----------CUGCUACu -5'
11661 3' -54 NC_003102.1 + 72692 0.67 0.936797
Target:  5'- cGGCGGCAACGauuCCGgcaUGugGAUGAc -3'
miRNA:   3'- -UCGCUGUUGCagcGGCa--GCugCUACU- -5'
11661 3' -54 NC_003102.1 + 105497 0.67 0.936797
Target:  5'- cAGCGGCGACGaCGgUGaCGACGAa-- -3'
miRNA:   3'- -UCGCUGUUGCaGCgGCaGCUGCUacu -5'
11661 3' -54 NC_003102.1 + 15860 0.67 0.936797
Target:  5'- cGCGACu-CGUCGgCGUCG-CGAc-- -3'
miRNA:   3'- uCGCUGuuGCAGCgGCAGCuGCUacu -5'
11661 3' -54 NC_003102.1 + 45864 0.67 0.936797
Target:  5'- cAGCGGCGGCGgcgGCUacgGUCGAUGAUu- -3'
miRNA:   3'- -UCGCUGUUGCag-CGG---CAGCUGCUAcu -5'
11661 3' -54 NC_003102.1 + 39159 0.67 0.931792
Target:  5'- -cCGACAAgG-CGCCGUUGACGuccGAg -3'
miRNA:   3'- ucGCUGUUgCaGCGGCAGCUGCua-CU- -5'
11661 3' -54 NC_003102.1 + 108700 0.67 0.931792
Target:  5'- uGGCGuCAuucugauCGUCGCCGUUGGCa---- -3'
miRNA:   3'- -UCGCuGUu------GCAGCGGCAGCUGcuacu -5'
11661 3' -54 NC_003102.1 + 31371 0.67 0.931792
Target:  5'- -uCGACAcUGUCGgacgguucaaCGUCGACGGUGAu -3'
miRNA:   3'- ucGCUGUuGCAGCg---------GCAGCUGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.