Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11661 | 3' | -54 | NC_003102.1 | + | 22930 | 0.66 | 0.965232 |
Target: 5'- -aCGAaAGCGUCGCCGcCGcCGAauUGAa -3' miRNA: 3'- ucGCUgUUGCAGCGGCaGCuGCU--ACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 120005 | 0.66 | 0.965232 |
Target: 5'- cGGCuaaauACAACG-CuUCGUCGACGAUGGc -3' miRNA: 3'- -UCGc----UGUUGCaGcGGCAGCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 128727 | 0.66 | 0.965232 |
Target: 5'- cGGCGACGGCGUUGUUaauUCGACaaauUGAu -3' miRNA: 3'- -UCGCUGUUGCAGCGGc--AGCUGcu--ACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 60202 | 0.66 | 0.961855 |
Target: 5'- cAGCGGCGGCG--GCgG-CGGCGAUGc -3' miRNA: 3'- -UCGCUGUUGCagCGgCaGCUGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 119059 | 0.66 | 0.958256 |
Target: 5'- uAGCGAUAGuCGUCGUgaUCG-CGGUGGc -3' miRNA: 3'- -UCGCUGUU-GCAGCGgcAGCuGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 70246 | 0.66 | 0.958256 |
Target: 5'- ---aACGACGUCGCCGgUGACaAUGAc -3' miRNA: 3'- ucgcUGUUGCAGCGGCaGCUGcUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 3970 | 0.66 | 0.958256 |
Target: 5'- cGCGACGuaucgaACGUCGCagaGguaUCGACGAa-- -3' miRNA: 3'- uCGCUGU------UGCAGCGg--C---AGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 15905 | 0.66 | 0.954431 |
Target: 5'- uAGUgGACAuguuCGUgGCCGauUCGAUGGUGGc -3' miRNA: 3'- -UCG-CUGUu---GCAgCGGC--AGCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 41474 | 0.66 | 0.952837 |
Target: 5'- uAGCGGCGGCGaggacaagauucgCGUCGUCGACu---- -3' miRNA: 3'- -UCGCUGUUGCa------------GCGGCAGCUGcuacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 135091 | 0.66 | 0.950376 |
Target: 5'- gGGCGACGACGgcggugGCUGguUCGACGcguuUGAu -3' miRNA: 3'- -UCGCUGUUGCag----CGGC--AGCUGCu---ACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 119716 | 0.66 | 0.950376 |
Target: 5'- --aGACGACGaCGaCGaCGACGAUGAa -3' miRNA: 3'- ucgCUGUUGCaGCgGCaGCUGCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 113736 | 0.67 | 0.946088 |
Target: 5'- gAGCGGCcgccACGUCGauuCgGUCGACGAc-- -3' miRNA: 3'- -UCGCUGu---UGCAGC---GgCAGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 87673 | 0.67 | 0.941562 |
Target: 5'- uGcCGGCGACGaaGCCGUCucguucauuaGACGAUGc -3' miRNA: 3'- uC-GCUGUUGCagCGGCAG----------CUGCUACu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 15860 | 0.67 | 0.936797 |
Target: 5'- cGCGACu-CGUCGgCGUCG-CGAc-- -3' miRNA: 3'- uCGCUGuuGCAGCgGCAGCuGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 105497 | 0.67 | 0.936797 |
Target: 5'- cAGCGGCGACGaCGgUGaCGACGAa-- -3' miRNA: 3'- -UCGCUGUUGCaGCgGCaGCUGCUacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 45864 | 0.67 | 0.936797 |
Target: 5'- cAGCGGCGGCGgcgGCUacgGUCGAUGAUu- -3' miRNA: 3'- -UCGCUGUUGCag-CGG---CAGCUGCUAcu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 72692 | 0.67 | 0.936797 |
Target: 5'- cGGCGGCAACGauuCCGgcaUGugGAUGAc -3' miRNA: 3'- -UCGCUGUUGCagcGGCa--GCugCUACU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 39159 | 0.67 | 0.931792 |
Target: 5'- -cCGACAAgG-CGCCGUUGACGuccGAg -3' miRNA: 3'- ucGCUGUUgCaGCGGCAGCUGCua-CU- -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 108700 | 0.67 | 0.931792 |
Target: 5'- uGGCGuCAuucugauCGUCGCCGUUGGCa---- -3' miRNA: 3'- -UCGCuGUu------GCAGCGGCAGCUGcuacu -5' |
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11661 | 3' | -54 | NC_003102.1 | + | 31371 | 0.67 | 0.931792 |
Target: 5'- -uCGACAcUGUCGgacgguucaaCGUCGACGGUGAu -3' miRNA: 3'- ucGCUGUuGCAGCg---------GCAGCUGCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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