miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11672 3' -46.6 NC_003102.1 + 111791 0.66 0.99992
Target:  5'- -aACGAUC--UGGGAGG-CGGCgCAGGa -3'
miRNA:   3'- uaUGUUAGuuGCUUUUCaGCCG-GUCC- -5'
11672 3' -46.6 NC_003102.1 + 36711 0.66 0.99992
Target:  5'- -gGCGAUCAcacCGAuccGUCGGCCGu- -3'
miRNA:   3'- uaUGUUAGUu--GCUuuuCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 126773 0.66 0.999821
Target:  5'- -cACGAUCGugGAGGAuaCGGCUuGGu -3'
miRNA:   3'- uaUGUUAGUugCUUUUcaGCCGGuCC- -5'
11672 3' -46.6 NC_003102.1 + 137025 0.67 0.999704
Target:  5'- -aACAuguacACGAAAAGUUGGCCAc- -3'
miRNA:   3'- uaUGUuagu-UGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 49147 0.67 0.999624
Target:  5'- -aACAAUCGAUGGAuacccaAAGUggCGGCCAa- -3'
miRNA:   3'- uaUGUUAGUUGCUU------UUCA--GCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 112394 0.67 0.999526
Target:  5'- -aACGGUguaGACGAGA--UCGGUCAGGu -3'
miRNA:   3'- uaUGUUAg--UUGCUUUucAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 36067 0.67 0.999526
Target:  5'- uGUACA-----UGAAAAGUCGGCCAc- -3'
miRNA:   3'- -UAUGUuaguuGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 37130 0.67 0.999526
Target:  5'- uGUACGGaucuUCGGCGGucauGAGUCGGCUg-- -3'
miRNA:   3'- -UAUGUU----AGUUGCUu---UUCAGCCGGucc -5'
11672 3' -46.6 NC_003102.1 + 95461 0.67 0.999515
Target:  5'- -cGCAAagGugGGAAcgaaacuAGUCGuGCCGGGu -3'
miRNA:   3'- uaUGUUagUugCUUU-------UCAGC-CGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 133097 0.67 0.999405
Target:  5'- -cGCGGUCuacugaAGCGuaaucuAAAAGcCGGCCAGGu -3'
miRNA:   3'- uaUGUUAG------UUGC------UUUUCaGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 134623 0.69 0.997981
Target:  5'- cAUACGAUaauugCGACGuGAGAGUUGGCCGa- -3'
miRNA:   3'- -UAUGUUA-----GUUGC-UUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 67281 0.69 0.997981
Target:  5'- uUGCAAaC-AUGuuuAAAGUCGGCCAGa -3'
miRNA:   3'- uAUGUUaGuUGCu--UUUCAGCCGGUCc -5'
11672 3' -46.6 NC_003102.1 + 104601 0.69 0.997576
Target:  5'- aAUAaAGUUuAUGAAAAGUCGGCCAc- -3'
miRNA:   3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 36374 0.69 0.996559
Target:  5'- ---aAAUU-ACaAAAAGUCGGCCAGGu -3'
miRNA:   3'- uaugUUAGuUGcUUUUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 76444 0.69 0.995931
Target:  5'- aGUAaAGUUuAUGAAAAGUCGGCCAc- -3'
miRNA:   3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 137328 0.7 0.995213
Target:  5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3'
miRNA:   3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 137404 0.7 0.995213
Target:  5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3'
miRNA:   3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5'
11672 3' -46.6 NC_003102.1 + 23233 0.7 0.992423
Target:  5'- gGUACAacgcGUCAAauucggcacCGuAAcAGUCGGCCAGGc -3'
miRNA:   3'- -UAUGU----UAGUU---------GC-UUuUCAGCCGGUCC- -5'
11672 3' -46.6 NC_003102.1 + 32065 0.71 0.991249
Target:  5'- -gGCAacgcAUCGACGuu--GUCGGCgAGGg -3'
miRNA:   3'- uaUGU----UAGUUGCuuuuCAGCCGgUCC- -5'
11672 3' -46.6 NC_003102.1 + 99463 0.71 0.989935
Target:  5'- -cACGAUCGACGAuccAGUC-GCCAGc -3'
miRNA:   3'- uaUGUUAGUUGCUuu-UCAGcCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.