Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11672 | 3' | -46.6 | NC_003102.1 | + | 111791 | 0.66 | 0.99992 |
Target: 5'- -aACGAUC--UGGGAGG-CGGCgCAGGa -3' miRNA: 3'- uaUGUUAGuuGCUUUUCaGCCG-GUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 36711 | 0.66 | 0.99992 |
Target: 5'- -gGCGAUCAcacCGAuccGUCGGCCGu- -3' miRNA: 3'- uaUGUUAGUu--GCUuuuCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 126773 | 0.66 | 0.999821 |
Target: 5'- -cACGAUCGugGAGGAuaCGGCUuGGu -3' miRNA: 3'- uaUGUUAGUugCUUUUcaGCCGGuCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 137025 | 0.67 | 0.999704 |
Target: 5'- -aACAuguacACGAAAAGUUGGCCAc- -3' miRNA: 3'- uaUGUuagu-UGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 49147 | 0.67 | 0.999624 |
Target: 5'- -aACAAUCGAUGGAuacccaAAGUggCGGCCAa- -3' miRNA: 3'- uaUGUUAGUUGCUU------UUCA--GCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 112394 | 0.67 | 0.999526 |
Target: 5'- -aACGGUguaGACGAGA--UCGGUCAGGu -3' miRNA: 3'- uaUGUUAg--UUGCUUUucAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 37130 | 0.67 | 0.999526 |
Target: 5'- uGUACGGaucuUCGGCGGucauGAGUCGGCUg-- -3' miRNA: 3'- -UAUGUU----AGUUGCUu---UUCAGCCGGucc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 36067 | 0.67 | 0.999526 |
Target: 5'- uGUACA-----UGAAAAGUCGGCCAc- -3' miRNA: 3'- -UAUGUuaguuGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 95461 | 0.67 | 0.999515 |
Target: 5'- -cGCAAagGugGGAAcgaaacuAGUCGuGCCGGGu -3' miRNA: 3'- uaUGUUagUugCUUU-------UCAGC-CGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 133097 | 0.67 | 0.999405 |
Target: 5'- -cGCGGUCuacugaAGCGuaaucuAAAAGcCGGCCAGGu -3' miRNA: 3'- uaUGUUAG------UUGC------UUUUCaGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 67281 | 0.69 | 0.997981 |
Target: 5'- uUGCAAaC-AUGuuuAAAGUCGGCCAGa -3' miRNA: 3'- uAUGUUaGuUGCu--UUUCAGCCGGUCc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 134623 | 0.69 | 0.997981 |
Target: 5'- cAUACGAUaauugCGACGuGAGAGUUGGCCGa- -3' miRNA: 3'- -UAUGUUA-----GUUGC-UUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 104601 | 0.69 | 0.997576 |
Target: 5'- aAUAaAGUUuAUGAAAAGUCGGCCAc- -3' miRNA: 3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 36374 | 0.69 | 0.996559 |
Target: 5'- ---aAAUU-ACaAAAAGUCGGCCAGGu -3' miRNA: 3'- uaugUUAGuUGcUUUUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 76444 | 0.69 | 0.995931 |
Target: 5'- aGUAaAGUUuAUGAAAAGUCGGCCAc- -3' miRNA: 3'- -UAUgUUAGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 137404 | 0.7 | 0.995213 |
Target: 5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3' miRNA: 3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 137328 | 0.7 | 0.995213 |
Target: 5'- cUACGG-CuAUGAAAAGUCGGCCGc- -3' miRNA: 3'- uAUGUUaGuUGCUUUUCAGCCGGUcc -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 23233 | 0.7 | 0.992423 |
Target: 5'- gGUACAacgcGUCAAauucggcacCGuAAcAGUCGGCCAGGc -3' miRNA: 3'- -UAUGU----UAGUU---------GC-UUuUCAGCCGGUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 32065 | 0.71 | 0.991249 |
Target: 5'- -gGCAacgcAUCGACGuu--GUCGGCgAGGg -3' miRNA: 3'- uaUGU----UAGUUGCuuuuCAGCCGgUCC- -5' |
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11672 | 3' | -46.6 | NC_003102.1 | + | 99463 | 0.71 | 0.989935 |
Target: 5'- -cACGAUCGACGAuccAGUC-GCCAGc -3' miRNA: 3'- uaUGUUAGUUGCUuu-UCAGcCGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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