miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11694 5' -45.1 NC_003102.1 + 82824 0.66 0.999998
Target:  5'- aCGAGCGcucuaGAacgUACGAcGACACG-UCGCu -3'
miRNA:   3'- gGCUCGUa----CU---AUGUU-UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 17794 0.66 0.999998
Target:  5'- aCCGAucGCuAUGAacaGGGGCACGAgCGCu -3'
miRNA:   3'- -GGCU--CG-UACUaugUUUUGUGCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 131429 0.66 0.999998
Target:  5'- aCCGuGCAcGAUcacCGAAGucuCGCGGUUGCa -3'
miRNA:   3'- -GGCuCGUaCUAu--GUUUU---GUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 31865 0.66 0.999998
Target:  5'- gCCGAGCAca--ACGAacccGAUACGAcgacgUCGCg -3'
miRNA:   3'- -GGCUCGUacuaUGUU----UUGUGCU-----AGCG- -5'
11694 5' -45.1 NC_003102.1 + 72320 0.66 0.999998
Target:  5'- gUCGcGCuucaGUACAugaucgcGGACGCGAUCGCc -3'
miRNA:   3'- -GGCuCGuac-UAUGU-------UUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 135101 0.66 0.999997
Target:  5'- aCCGuccaaCAUGAUGCGcuuGGCcguuuCGAUCGCc -3'
miRNA:   3'- -GGCuc---GUACUAUGUu--UUGu----GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 117654 0.66 0.999997
Target:  5'- aCCGcuggaaaaAGCcgucUGGUACAcgGAACACG-UCGCc -3'
miRNA:   3'- -GGC--------UCGu---ACUAUGU--UUUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 7191 0.66 0.999997
Target:  5'- aCGA-CAUGGcucUACGAcACACGAUCa- -3'
miRNA:   3'- gGCUcGUACU---AUGUUuUGUGCUAGcg -5'
11694 5' -45.1 NC_003102.1 + 35616 0.66 0.999997
Target:  5'- uCCGGGUGUcggacGAUACGGcAGCAUGGgugUGCg -3'
miRNA:   3'- -GGCUCGUA-----CUAUGUU-UUGUGCUa--GCG- -5'
11694 5' -45.1 NC_003102.1 + 18040 0.66 0.999997
Target:  5'- gUCGGGCGUGcUAUGAAcgGgACGAuucUCGCc -3'
miRNA:   3'- -GGCUCGUACuAUGUUU--UgUGCU---AGCG- -5'
11694 5' -45.1 NC_003102.1 + 107489 0.66 0.999995
Target:  5'- gCG-GCAUGAUGCuGAGCAaguacgGAUUGUc -3'
miRNA:   3'- gGCuCGUACUAUGuUUUGUg-----CUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 105659 0.66 0.999995
Target:  5'- gCCGccucuGGUAaacUGcgAUGAAACGCGAUUGCc -3'
miRNA:   3'- -GGC-----UCGU---ACuaUGUUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 98275 0.66 0.999993
Target:  5'- gCGAcGC-UGAaAUAAAACGCG-UCGCc -3'
miRNA:   3'- gGCU-CGuACUaUGUUUUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 46813 0.66 0.99999
Target:  5'- aCGAGgcUGGcgaaaGAGACAUGGUCGCa -3'
miRNA:   3'- gGCUCguACUaug--UUUUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 70453 0.66 0.99999
Target:  5'- aCGAGCAacauGUACAAugacGGCAUG-UCGCu -3'
miRNA:   3'- gGCUCGUac--UAUGUU----UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 39795 0.66 0.99999
Target:  5'- aUCGAGaCGUGAaACAGAuGCGgCGAcCGCu -3'
miRNA:   3'- -GGCUC-GUACUaUGUUU-UGU-GCUaGCG- -5'
11694 5' -45.1 NC_003102.1 + 102617 0.66 0.99999
Target:  5'- aCGAGCAucaaaUGuuuUAUAuguuAACAcCGAUCGCc -3'
miRNA:   3'- gGCUCGU-----ACu--AUGUu---UUGU-GCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 68233 0.66 0.99999
Target:  5'- gUGAuGCugAUGAUAUAcuuuAGCAUGAUCGUa -3'
miRNA:   3'- gGCU-CG--UACUAUGUu---UUGUGCUAGCG- -5'
11694 5' -45.1 NC_003102.1 + 121122 0.67 0.999987
Target:  5'- gCCGuGCGgcAUGCAGccaacuGGCACG-UCGCa -3'
miRNA:   3'- -GGCuCGUacUAUGUU------UUGUGCuAGCG- -5'
11694 5' -45.1 NC_003102.1 + 47033 0.67 0.999987
Target:  5'- aCCGuGCccGAUACA-GACGCGuccGUCGa -3'
miRNA:   3'- -GGCuCGuaCUAUGUuUUGUGC---UAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.