miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 3' -49.2 NC_003102.1 + 96506 0.66 0.997801
Target:  5'- --cUCGAuucuaACCUGGCCGACa------- -3'
miRNA:   3'- uuuAGCU-----UGGACCGGCUGaaaagcac -5'
11701 3' -49.2 NC_003102.1 + 56129 0.66 0.997801
Target:  5'- --uUUGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- uuuAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 10515 0.66 0.997801
Target:  5'- --uUUGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- uuuAGCUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 128654 0.66 0.997372
Target:  5'- -uAUCGAACUUGGCCG-CgagcaUCGg- -3'
miRNA:   3'- uuUAGCUUGGACCGGCuGaaa--AGCac -5'
11701 3' -49.2 NC_003102.1 + 67453 0.66 0.997372
Target:  5'- -uAUCuAAUCUGGCCGACUUUa---- -3'
miRNA:   3'- uuUAGcUUGGACCGGCUGAAAagcac -5'
11701 3' -49.2 NC_003102.1 + 103792 0.66 0.996304
Target:  5'- --uUUGAACgCgu-CCGACUUUUCGUGa -3'
miRNA:   3'- uuuAGCUUG-GaccGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 56224 0.66 0.996304
Target:  5'- cGAUCuGAACgUGuCUGACUUUUCGUa -3'
miRNA:   3'- uUUAG-CUUGgACcGGCUGAAAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 107304 0.67 0.994902
Target:  5'- -cGUCGGGCgaGGCCGACgacaaucCGUa -3'
miRNA:   3'- uuUAGCUUGgaCCGGCUGaaaa---GCAc -5'
11701 3' -49.2 NC_003102.1 + 112610 0.67 0.994054
Target:  5'- cGAAUCGAACgUGuCCGACUUUUaGUu -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAAAgCAc -5'
11701 3' -49.2 NC_003102.1 + 36094 0.67 0.992021
Target:  5'- --uUCGAACCUGuCUGACUUUUUa-- -3'
miRNA:   3'- uuuAGCUUGGACcGGCUGAAAAGcac -5'
11701 3' -49.2 NC_003102.1 + 95636 0.68 0.98947
Target:  5'- ---cCGGACCcGGCaCGACUagUUUCGUu -3'
miRNA:   3'- uuuaGCUUGGaCCG-GCUGA--AAAGCAc -5'
11701 3' -49.2 NC_003102.1 + 42736 0.68 0.987977
Target:  5'- --uUCGAuuacaACUUGuCUGACUUUUCGUGa -3'
miRNA:   3'- uuuAGCU-----UGGACcGGCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 133286 0.68 0.986324
Target:  5'- cAAGUgGGacacaACCUGGCCGGCUUUUa--- -3'
miRNA:   3'- -UUUAgCU-----UGGACCGGCUGAAAAgcac -5'
11701 3' -49.2 NC_003102.1 + 42592 0.68 0.986324
Target:  5'- uGAAUUGAACUUGuCCGACUUUUUauaaGUGu -3'
miRNA:   3'- -UUUAGCUUGGACcGGCUGAAAAG----CAC- -5'
11701 3' -49.2 NC_003102.1 + 124 0.68 0.982503
Target:  5'- --cUCGAACgCgaGGCCGACgag-CGUGa -3'
miRNA:   3'- uuuAGCUUG-Ga-CCGGCUGaaaaGCAC- -5'
11701 3' -49.2 NC_003102.1 + 132780 0.69 0.975336
Target:  5'- ---aUGAACCUGuuaGACUUUUCGUGa -3'
miRNA:   3'- uuuaGCUUGGACcggCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 132701 0.69 0.975336
Target:  5'- ---aUGAACCUGuuaGACUUUUCGUGa -3'
miRNA:   3'- uuuaGCUUGGACcggCUGAAAAGCAC- -5'
11701 3' -49.2 NC_003102.1 + 112791 0.7 0.96623
Target:  5'- cGAAUCGAACgUGuCUGACUUUuuauagUCGUGg -3'
miRNA:   3'- -UUUAGCUUGgACcGGCUGAAA------AGCAC- -5'
11701 3' -49.2 NC_003102.1 + 89398 0.7 0.962728
Target:  5'- cAAAUCaAACUUGGCUGACUUUUgGa- -3'
miRNA:   3'- -UUUAGcUUGGACCGGCUGAAAAgCac -5'
11701 3' -49.2 NC_003102.1 + 42661 0.71 0.946209
Target:  5'- ---aUGAACCcGGCUGACUUUUCa-- -3'
miRNA:   3'- uuuaGCUUGGaCCGGCUGAAAAGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.