miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 10573 0.66 0.999457
Target:  5'- -gCaCGAAAAGUCGGcCAgGUUCGAAu -3'
miRNA:   3'- agGcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 31236 0.66 0.999323
Target:  5'- --aGCGucGAGUUGGACACGaUCGAu -3'
miRNA:   3'- aggCGCuuUUCAGUCUGUGCaAGUUu -5'
11701 5' -47.6 NC_003102.1 + 42567 0.66 0.99916
Target:  5'- gUUCaCGAAAAGUCAGACAaguUGUaaUCGAAc -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGU---GCA--AGUUU- -5'
11701 5' -47.6 NC_003102.1 + 10844 0.66 0.99916
Target:  5'- gUUCaUGAAAAGUCAGACAaGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67142 0.66 0.99916
Target:  5'- aUCGCuuaucGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGCG-----CUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 37557 0.67 0.998965
Target:  5'- uUCUGCGcuAAGUCcaAGACGC-UUCAAu -3'
miRNA:   3'- -AGGCGCuuUUCAG--UCUGUGcAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 76640 0.67 0.998965
Target:  5'- aUCaaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- -AGgcGCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 25808 0.67 0.998733
Target:  5'- aUCaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGcGCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 103818 0.67 0.998733
Target:  5'- aUCUaUGAAGAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137032 0.67 0.998733
Target:  5'- -aCaCGAAAAGUUGGcCACGUUCGAu -3'
miRNA:   3'- agGcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 77936 0.67 0.998458
Target:  5'- uUCUGCGGGcGGcagCAucGACACGUUCAu- -3'
miRNA:   3'- -AGGCGCUUuUCa--GU--CUGUGCAAGUuu -5'
11701 5' -47.6 NC_003102.1 + 10411 0.67 0.998458
Target:  5'- gCCucaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGc--GCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 26222 0.67 0.997755
Target:  5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 118011 0.67 0.997755
Target:  5'- --aGUGGAcAAGUCGGACACGaUCAu- -3'
miRNA:   3'- aggCGCUU-UUCAGUCUGUGCaAGUuu -5'
11701 5' -47.6 NC_003102.1 + 63272 0.67 0.997755
Target:  5'- gUCCaGCGAAcucGAGUUuGACACGaUCGAu -3'
miRNA:   3'- -AGG-CGCUU---UUCAGuCUGUGCaAGUUu -5'
11701 5' -47.6 NC_003102.1 + 26139 0.67 0.997755
Target:  5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26545 0.67 0.997714
Target:  5'- -aUGCGccaucuaAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- agGCGC-------UUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 55913 0.68 0.997217
Target:  5'- gUUCGUGAAAAGUCuaacaaguucauGAaCAUGUUCAAAu -3'
miRNA:   3'- -AGGCGCUUUUCAGu-----------CU-GUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 112730 0.68 0.996801
Target:  5'- gUCaaCGAAAAGUCGGcCAgGUUCGAAu -3'
miRNA:   3'- -AGgcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 10605 0.68 0.995535
Target:  5'- cCCGauaCGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- aGGC---GCUUUUCAGUCUGUgcaAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.