Results 1 - 20 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 10573 | 0.66 | 0.999457 |
Target: 5'- -gCaCGAAAAGUCGGcCAgGUUCGAAu -3' miRNA: 3'- agGcGCUUUUCAGUCuGUgCAAGUUU- -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 31236 | 0.66 | 0.999323 |
Target: 5'- --aGCGucGAGUUGGACACGaUCGAu -3' miRNA: 3'- aggCGCuuUUCAGUCUGUGCaAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 10844 | 0.66 | 0.99916 |
Target: 5'- gUUCaUGAAAAGUCAGACAaGUUUGAAu -3' miRNA: 3'- -AGGcGCUUUUCAGUCUGUgCAAGUUU- -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 42567 | 0.66 | 0.99916 |
Target: 5'- gUUCaCGAAAAGUCAGACAaguUGUaaUCGAAc -3' miRNA: 3'- -AGGcGCUUUUCAGUCUGU---GCA--AGUUU- -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 67142 | 0.66 | 0.99916 |
Target: 5'- aUCGCuuaucGAAAAGUCGGcCAgGUUCGAu -3' miRNA: 3'- aGGCG-----CUUUUCAGUCuGUgCAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 37557 | 0.67 | 0.998965 |
Target: 5'- uUCUGCGcuAAGUCcaAGACGC-UUCAAu -3' miRNA: 3'- -AGGCGCuuUUCAG--UCUGUGcAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 76640 | 0.67 | 0.998965 |
Target: 5'- aUCaaCGAAAAGUCGGcCAgGUUCGAu -3' miRNA: 3'- -AGgcGCUUUUCAGUCuGUgCAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 103818 | 0.67 | 0.998733 |
Target: 5'- aUCUaUGAAGAGUCGGcCAgGUUCGAu -3' miRNA: 3'- -AGGcGCUUUUCAGUCuGUgCAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 25808 | 0.67 | 0.998733 |
Target: 5'- aUCaCGAAAAGUCGGcCAgGUUCGAu -3' miRNA: 3'- aGGcGCUUUUCAGUCuGUgCAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 137032 | 0.67 | 0.998733 |
Target: 5'- -aCaCGAAAAGUUGGcCACGUUCGAu -3' miRNA: 3'- agGcGCUUUUCAGUCuGUGCAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 77936 | 0.67 | 0.998458 |
Target: 5'- uUCUGCGGGcGGcagCAucGACACGUUCAu- -3' miRNA: 3'- -AGGCGCUUuUCa--GU--CUGUGCAAGUuu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 10411 | 0.67 | 0.998458 |
Target: 5'- gCCucaCGAAAAGUCGGcCAgGUUCGAu -3' miRNA: 3'- aGGc--GCUUUUCAGUCuGUgCAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 26139 | 0.67 | 0.997755 |
Target: 5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3' miRNA: 3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 26222 | 0.67 | 0.997755 |
Target: 5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3' miRNA: 3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 118011 | 0.67 | 0.997755 |
Target: 5'- --aGUGGAcAAGUCGGACACGaUCAu- -3' miRNA: 3'- aggCGCUU-UUCAGUCUGUGCaAGUuu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 63272 | 0.67 | 0.997755 |
Target: 5'- gUCCaGCGAAcucGAGUUuGACACGaUCGAu -3' miRNA: 3'- -AGG-CGCUU---UUCAGuCUGUGCaAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 26545 | 0.67 | 0.997714 |
Target: 5'- -aUGCGccaucuaAAAAGUCGGcCACGUUCGAu -3' miRNA: 3'- agGCGC-------UUUUCAGUCuGUGCAAGUUu -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 55913 | 0.68 | 0.997217 |
Target: 5'- gUUCGUGAAAAGUCuaacaaguucauGAaCAUGUUCAAAu -3' miRNA: 3'- -AGGCGCUUUUCAGu-----------CU-GUGCAAGUUU- -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 112730 | 0.68 | 0.996801 |
Target: 5'- gUCaaCGAAAAGUCGGcCAgGUUCGAAu -3' miRNA: 3'- -AGgcGCUUUUCAGUCuGUgCAAGUUU- -5' |
|||||||
11701 | 5' | -47.6 | NC_003102.1 | + | 10605 | 0.68 | 0.995535 |
Target: 5'- cCCGauaCGAAAAGUCAGACAag-UUAGAa -3' miRNA: 3'- aGGC---GCUUUUCAGUCUGUgcaAGUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home