miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 11416 0.66 0.407364
Target:  5'- gGAACAGCUG-CGCCGUCaGCGGUuuGCUg -3'
miRNA:   3'- -CUUGUUGGUgGCGGCGG-CGUCGu-CGG- -5'
11865 3' -58.8 NC_003266.2 + 34250 0.66 0.407364
Target:  5'- uGAGCGcucgaagcGCCgagACCGUCGCCGacgAGCGGUg -3'
miRNA:   3'- -CUUGU--------UGG---UGGCGGCGGCg--UCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 22393 0.66 0.407364
Target:  5'- cAACAACgaCGCgCGCUGCUGCGuGCAcgacGCCg -3'
miRNA:   3'- cUUGUUG--GUG-GCGGCGGCGU-CGU----CGG- -5'
11865 3' -58.8 NC_003266.2 + 25951 0.66 0.407364
Target:  5'- aGAAaauCCACaGCgGCgGCGGCGGCa -3'
miRNA:   3'- -CUUguuGGUGgCGgCGgCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 12710 0.66 0.407364
Target:  5'- aGGGC-GCCACCaGCaGCaGCAGCAGgCg -3'
miRNA:   3'- -CUUGuUGGUGG-CGgCGgCGUCGUCgG- -5'
11865 3' -58.8 NC_003266.2 + 20174 0.66 0.398027
Target:  5'- aGAGCAugUug-GCCGCCGagaGGUAGUCg -3'
miRNA:   3'- -CUUGUugGuggCGGCGGCg--UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 17995 0.66 0.398027
Target:  5'- ---aAGCCcCUGCCGCCGgUGGCcguGGCCc -3'
miRNA:   3'- cuugUUGGuGGCGGCGGC-GUCG---UCGG- -5'
11865 3' -58.8 NC_003266.2 + 24608 0.66 0.370854
Target:  5'- aGACAGCCAUgGgCGUgugGCAGCAGUg -3'
miRNA:   3'- cUUGUUGGUGgCgGCGg--CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 13617 0.66 0.370854
Target:  5'- gGGACGAUgAggauuCCGCCGaCGaCAGCAGCg -3'
miRNA:   3'- -CUUGUUGgU-----GGCGGCgGC-GUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 17166 0.66 0.370854
Target:  5'- cGGgAugCGCCGCCacccccaccgGCgGCGGCGcGCCa -3'
miRNA:   3'- cUUgUugGUGGCGG----------CGgCGUCGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 9347 0.66 0.370854
Target:  5'- -cGCAGCgUAaagaCGCCGCCGCgcaucuccaGGUGGCCc -3'
miRNA:   3'- cuUGUUG-GUg---GCGGCGGCG---------UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 6292 0.67 0.362083
Target:  5'- ---uGGCCACCucGCCG-CGCAGgGGCUc -3'
miRNA:   3'- cuugUUGGUGG--CGGCgGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 6218 0.67 0.362083
Target:  5'- -uGCAGCucaaCAUCGCCGCCaaGgAGCGcGCCg -3'
miRNA:   3'- cuUGUUG----GUGGCGGCGG--CgUCGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 13563 0.67 0.353456
Target:  5'- gGGGCAguGCCGcCCGUaaaCGCCGCuggcacgacaGGCAGCg -3'
miRNA:   3'- -CUUGU--UGGU-GGCG---GCGGCG----------UCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 4739 0.67 0.353456
Target:  5'- ---gGACuUACCGCaGCCGguGgGGCCg -3'
miRNA:   3'- cuugUUG-GUGGCGgCGGCguCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 9608 0.67 0.353456
Target:  5'- -cACAccCCACCGCCGCCagaagaaaccguGCu-CAGCCu -3'
miRNA:   3'- cuUGUu-GGUGGCGGCGG------------CGucGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 8530 0.67 0.353456
Target:  5'- ---gAACCugC-CCGCgCGCGGC-GCCg -3'
miRNA:   3'- cuugUUGGugGcGGCG-GCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 11956 0.67 0.34246
Target:  5'- cAACAGCCACCuccugauccccaauGCgggcggCGCUGCAGagcCAGCCg -3'
miRNA:   3'- cUUGUUGGUGG--------------CG------GCGGCGUC---GUCGG- -5'
11865 3' -58.8 NC_003266.2 + 24711 0.67 0.336643
Target:  5'- cGAGCGcACCACCGCCuCgGaccuGGCAGaCCu -3'
miRNA:   3'- -CUUGU-UGGUGGCGGcGgCg---UCGUC-GG- -5'
11865 3' -58.8 NC_003266.2 + 15615 0.67 0.336643
Target:  5'- -cGCAACuaCACCcCCGCCGCcGC-GCCc -3'
miRNA:   3'- cuUGUUG--GUGGcGGCGGCGuCGuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.