miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 4164 0.66 0.638108
Target:  5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3'
miRNA:   3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5'
11910 5' -54.3 NC_003278.1 + 10175 0.66 0.638108
Target:  5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3'
miRNA:   3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 21866 0.66 0.638108
Target:  5'- cGgcGCGCCUGcGCGCc---CGCCu-GCa -3'
miRNA:   3'- -CauUGCGGAC-CGCGuuguGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 22124 0.66 0.638108
Target:  5'- -cGACGCUgaUGGaCGUAgGC-CGUCAAGCg -3'
miRNA:   3'- caUUGCGG--ACC-GCGU-UGuGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 14753 0.66 0.638108
Target:  5'- ---cCGCC-GGCaGCAACccgaccACGCUggGCg -3'
miRNA:   3'- cauuGCGGaCCG-CGUUG------UGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 12940 0.66 0.638108
Target:  5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3'
miRNA:   3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 19692 0.66 0.638108
Target:  5'- -gAGCGCCUGacccaagccCGCAACACcuacaGCCGcGGCa -3'
miRNA:   3'- caUUGCGGACc--------GCGUUGUG-----CGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 4529 0.66 0.638108
Target:  5'- aGUGG-GCCUGGC-CGGCuggugaguucgGCGCCuauGGCg -3'
miRNA:   3'- -CAUUgCGGACCGcGUUG-----------UGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 3225 0.66 0.626567
Target:  5'- gGUGACGaUCUGGCGCcaGAUGCGguCCucGCa -3'
miRNA:   3'- -CAUUGC-GGACCGCG--UUGUGC--GGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 31742 0.66 0.626567
Target:  5'- -gAGCGCCUGGC-CggUGuC-CCGGGCa -3'
miRNA:   3'- caUUGCGGACCGcGuuGU-GcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12002 0.66 0.626567
Target:  5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3'
miRNA:   3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 32619 0.66 0.615033
Target:  5'- -gGGCGCCaucaucGGCGuCAAguCGCCcGGCc -3'
miRNA:   3'- caUUGCGGa-----CCGC-GUUguGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 18523 0.66 0.615033
Target:  5'- gGUGACGCCcagcccGGCG-AAgACaCCGAGCa -3'
miRNA:   3'- -CAUUGCGGa-----CCGCgUUgUGcGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26945 0.66 0.615033
Target:  5'- --cACaCCUGGcCGCAcgACAUGCCGaagucGGCg -3'
miRNA:   3'- cauUGcGGACC-GCGU--UGUGCGGU-----UCG- -5'
11910 5' -54.3 NC_003278.1 + 16172 0.66 0.615033
Target:  5'- -gGGCGCCgcgcugGGUGCGgaaggcgcGCACGUCGcucugcugAGCg -3'
miRNA:   3'- caUUGCGGa-----CCGCGU--------UGUGCGGU--------UCG- -5'
11910 5' -54.3 NC_003278.1 + 28758 0.66 0.608119
Target:  5'- -gAACGaCCUGcaccaGCGCuggauguucaucgauGACGCGgCCGAGCg -3'
miRNA:   3'- caUUGC-GGAC-----CGCG---------------UUGUGC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 16662 0.66 0.603514
Target:  5'- -cGACGcCCUGGuCGCAcgucacCGCGaCGAGCu -3'
miRNA:   3'- caUUGC-GGACC-GCGUu-----GUGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 19391 0.66 0.603514
Target:  5'- --cGCGCUggccGCGCAACAgGCaCGGGUg -3'
miRNA:   3'- cauUGCGGac--CGCGUUGUgCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 20332 0.66 0.603514
Target:  5'- ---cCGCCUGG-GCAcguccaagGCGguaGCCAAGCu -3'
miRNA:   3'- cauuGCGGACCgCGU--------UGUg--CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 2057 0.66 0.603514
Target:  5'- -cGGCGCCUGcaGCgGCAucCGCGuacCCAGGCg -3'
miRNA:   3'- caUUGCGGAC--CG-CGUu-GUGC---GGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.