miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 30012 0.68 0.513143
Target:  5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3'
miRNA:   3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 29897 0.71 0.327391
Target:  5'- -gAGgGCCUGGCGCuugaggauCGCGUCGcGCa -3'
miRNA:   3'- caUUgCGGACCGCGuu------GUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 29829 0.67 0.569161
Target:  5'- --cGCGCCggcGGCGC----CGCCAAGUc -3'
miRNA:   3'- cauUGCGGa--CCGCGuuguGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 29235 0.73 0.251588
Target:  5'- -aAGCGCCUgcucGGCGUGGC-CGCCGGuGCg -3'
miRNA:   3'- caUUGCGGA----CCGCGUUGuGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 29042 0.71 0.344444
Target:  5'- -gGGCGCCcuugccGGCcuGCAGCACGCCGgaaauguacGGCu -3'
miRNA:   3'- caUUGCGGa-----CCG--CGUUGUGCGGU---------UCG- -5'
11910 5' -54.3 NC_003278.1 + 28979 0.72 0.27929
Target:  5'- -gGGCGCC-GGCGUAAUcgccggcaucgauGCGCCAgAGCa -3'
miRNA:   3'- caUUGCGGaCCGCGUUG-------------UGCGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 28904 0.76 0.147581
Target:  5'- aUGACGCagccGGCGguACGCGCgAAGCg -3'
miRNA:   3'- cAUUGCGga--CCGCguUGUGCGgUUCG- -5'
11910 5' -54.3 NC_003278.1 + 28758 0.66 0.608119
Target:  5'- -gAACGaCCUGcaccaGCGCuggauguucaucgauGACGCGgCCGAGCg -3'
miRNA:   3'- caUUGC-GGAC-----CGCG---------------UUGUGC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 27845 0.71 0.335838
Target:  5'- --uACGCCgcaGGgGCuGCGCGgCAAGCg -3'
miRNA:   3'- cauUGCGGa--CCgCGuUGUGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 27747 0.67 0.580569
Target:  5'- gGUcACGCCggcGGUGCGACcguagugcCGCCAgcacAGCg -3'
miRNA:   3'- -CAuUGCGGa--CCGCGUUGu-------GCGGU----UCG- -5'
11910 5' -54.3 NC_003278.1 + 27469 0.69 0.418841
Target:  5'- ---gUGCCggUGGC-CAGCcagGCGCCGAGCa -3'
miRNA:   3'- cauuGCGG--ACCGcGUUG---UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 27166 0.71 0.327391
Target:  5'- gGUAGCaGaCCaGGCGCAGCGCGgCA-GCg -3'
miRNA:   3'- -CAUUG-C-GGaCCGCGUUGUGCgGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 26945 0.66 0.615033
Target:  5'- --cACaCCUGGcCGCAcgACAUGCCGaagucGGCg -3'
miRNA:   3'- cauUGcGGACC-GCGU--UGUGCGGU-----UCG- -5'
11910 5' -54.3 NC_003278.1 + 26464 0.67 0.546525
Target:  5'- gGUAucguCGaUCUGGCG-AGCGuuCGCCAGGCg -3'
miRNA:   3'- -CAUu---GC-GGACCGCgUUGU--GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26290 0.68 0.513143
Target:  5'- -cAGCGCCUuGUGUA--GCGCCGGGUc -3'
miRNA:   3'- caUUGCGGAcCGCGUugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26144 0.72 0.28753
Target:  5'- -cAACaCCUGGCGCAgaaggcucacgcGCugGCCucGGCg -3'
miRNA:   3'- caUUGcGGACCGCGU------------UGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 26112 0.72 0.28753
Target:  5'- ---cCGCUUGGCcacucCGACGCGCUggGCa -3'
miRNA:   3'- cauuGCGGACCGc----GUUGUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 26009 0.67 0.55781
Target:  5'- ----gGCCUGGCGgGAaa-GCUggGCg -3'
miRNA:   3'- cauugCGGACCGCgUUgugCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 25917 0.79 0.094083
Target:  5'- -cAGCGCCUGGCGCAGCugcUGCCGcuguuggucaggucGGCc -3'
miRNA:   3'- caUUGCGGACCGCGUUGu--GCGGU--------------UCG- -5'
11910 5' -54.3 NC_003278.1 + 25274 0.67 0.580569
Target:  5'- -cGGCGCUUGaCGaCGACACGCUcGGUc -3'
miRNA:   3'- caUUGCGGACcGC-GUUGUGCGGuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.