miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 18779 0.68 0.502199
Target:  5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3'
miRNA:   3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 30012 0.68 0.513143
Target:  5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3'
miRNA:   3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 22608 0.67 0.569161
Target:  5'- -cAGCGcCCUGG-GC-GCugGCCA-GCa -3'
miRNA:   3'- caUUGC-GGACCgCGuUGugCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 4164 0.66 0.638108
Target:  5'- cUAGC-CUUGGCGCcGC-CGCCuugAGGCu -3'
miRNA:   3'- cAUUGcGGACCGCGuUGuGCGG---UUCG- -5'
11910 5' -54.3 NC_003278.1 + 4702 0.69 0.418841
Target:  5'- ---cCGCuCUGGcCGCuguCGCGCUggGCg -3'
miRNA:   3'- cauuGCG-GACC-GCGuu-GUGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 4655 0.69 0.449148
Target:  5'- gGUGG-GCUUGGcCGUuguACAgGCCGAGCa -3'
miRNA:   3'- -CAUUgCGGACC-GCGu--UGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 15514 0.67 0.535313
Target:  5'- --cAUGCC-GG-GCAugGCGCCGAGg -3'
miRNA:   3'- cauUGCGGaCCgCGUugUGCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 10175 0.66 0.638108
Target:  5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3'
miRNA:   3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 3229 0.69 0.449148
Target:  5'- ----gGCCggcGGCGuCGAUAuCGCCGGGCa -3'
miRNA:   3'- cauugCGGa--CCGC-GUUGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12940 0.66 0.638108
Target:  5'- ----aGCCagaGGUGCAGCacgGCGCCGcGCg -3'
miRNA:   3'- cauugCGGa--CCGCGUUG---UGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 8412 0.67 0.524183
Target:  5'- gGUGGCGCCgcaGaGCGCGuuugugcauuGCGCGUacauCGAGCg -3'
miRNA:   3'- -CAUUGCGGa--C-CGCGU----------UGUGCG----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 32161 0.68 0.481695
Target:  5'- -cGACGCCcaguucgaUGGCGCAugAgGCCuacacauucuggacuGGCg -3'
miRNA:   3'- caUUGCGG--------ACCGCGUugUgCGGu--------------UCG- -5'
11910 5' -54.3 NC_003278.1 + 21497 0.67 0.535313
Target:  5'- -gGAUGUCcGGCGUGAUGCGCaggucCAGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUGUGCG-----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 26009 0.67 0.55781
Target:  5'- ----gGCCUGGCGgGAaa-GCUggGCg -3'
miRNA:   3'- cauugCGGACCGCgUUgugCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 21904 0.66 0.592023
Target:  5'- --uGCGCCagGGCuuCGGCG-GCCAGGCg -3'
miRNA:   3'- cauUGCGGa-CCGc-GUUGUgCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 12002 0.66 0.626567
Target:  5'- aGUAGCGCaggcGGCGCGGCuuGCUcuGGUc -3'
miRNA:   3'- -CAUUGCGga--CCGCGUUGugCGGu-UCG- -5'
11910 5' -54.3 NC_003278.1 + 24817 0.7 0.39838
Target:  5'- cGUGAuCGCCUgGGCGUcgcccuuGGCGCGCagauAGCg -3'
miRNA:   3'- -CAUU-GCGGA-CCGCG-------UUGUGCGgu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 17978 0.69 0.418841
Target:  5'- ---gUGCCUGG-GCAacaGCugGCgCAGGCa -3'
miRNA:   3'- cauuGCGGACCgCGU---UGugCG-GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 5703 0.69 0.428806
Target:  5'- -cGGCGCCgccGGCGCGGCuguuguCGCUgcggucggccucGAGCa -3'
miRNA:   3'- caUUGCGGa--CCGCGUUGu-----GCGG------------UUCG- -5'
11910 5' -54.3 NC_003278.1 + 12714 0.69 0.442989
Target:  5'- -cAGCGCC-GGCGCgAGCACcggcuucagguuguuGCCGAGg -3'
miRNA:   3'- caUUGCGGaCCGCG-UUGUG---------------CGGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.