Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 25103 | 0.66 | 0.56331 |
Target: 5'- gCCgGGCGccugaUCuGcgGCGUCucGAGCAUGACg -3' miRNA: 3'- -GG-CCGU-----AG-CuaCGCGGu-CUCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 3466 | 0.73 | 0.231932 |
Target: 5'- gCCGGCcgCGGcuCGCCAGAcGCggGACg -3' miRNA: 3'- -GGCCGuaGCUacGCGGUCU-CGuaCUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 27096 | 0.73 | 0.213763 |
Target: 5'- aUGGcCAUgGAUGCGCC-GAGCAggcUGGCg -3' miRNA: 3'- gGCC-GUAgCUACGCGGuCUCGU---ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 3234 | 0.7 | 0.325948 |
Target: 5'- gCGGCGUCGAUauCGCCGG-GCAgcGGCa -3' miRNA: 3'- gGCCGUAGCUAc-GCGGUCuCGUa-CUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 13824 | 0.74 | 0.186203 |
Target: 5'- aCGGuUGUCGAuggugauggccUGCGCCGGGGCGcUGGCg -3' miRNA: 3'- gGCC-GUAGCU-----------ACGCGGUCUCGU-ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 17078 | 0.72 | 0.244754 |
Target: 5'- gCCGGUAUCGucuUGCuggaaugaGCCGGcgaagcgcAGCAUGACg -3' miRNA: 3'- -GGCCGUAGCu--ACG--------CGGUC--------UCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 27033 | 0.66 | 0.574527 |
Target: 5'- gUGGCGaCGAUggcGUGCCAGAuGC-UGACc -3' miRNA: 3'- gGCCGUaGCUA---CGCGGUCU-CGuACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 14630 | 0.66 | 0.585794 |
Target: 5'- aCCgGGCAggcgaaugcCGAUgGUGCC-GAGCAUGAa -3' miRNA: 3'- -GG-CCGUa--------GCUA-CGCGGuCUCGUACUg -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 15969 | 0.76 | 0.132524 |
Target: 5'- gCCGGCGUUGcugaggcgcGUGCGCaguugcugCAGGGCGUGGCu -3' miRNA: 3'- -GGCCGUAGC---------UACGCG--------GUCUCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 28995 | 1.12 | 0.000312 |
Target: 5'- gCCGGCAUCGAUGCGCCAGAGCAUGACg -3' miRNA: 3'- -GGCCGUAGCUACGCGGUCUCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 3210 | 0.67 | 0.505042 |
Target: 5'- cUCGGCAUCGAggauggugacgaucUgGCGCCAGAuGCGg--- -3' miRNA: 3'- -GGCCGUAGCU--------------A-CGCGGUCU-CGUacug -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 22064 | 0.72 | 0.265085 |
Target: 5'- cCCGGCGU-GcUGCuGCCGGAGC-UGGCc -3' miRNA: 3'- -GGCCGUAgCuACG-CGGUCUCGuACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 20273 | 0.69 | 0.368972 |
Target: 5'- cUCGGCAaCGcugGCGuCCAGGGCAgcaUGGCc -3' miRNA: 3'- -GGCCGUaGCua-CGC-GGUCUCGU---ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 27517 | 0.69 | 0.387238 |
Target: 5'- -gGGCAUCGAcugGgGCCAGGGa--GACg -3' miRNA: 3'- ggCCGUAGCUa--CgCGGUCUCguaCUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 9606 | 0.69 | 0.387238 |
Target: 5'- gCGGCAgcaGcUGCGCCAG-GCGcUGGCc -3' miRNA: 3'- gGCCGUag-CuACGCGGUCuCGU-ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 20303 | 0.69 | 0.396591 |
Target: 5'- nCCGGCAccUCGAUGCGCUcu-GUucUGACc -3' miRNA: 3'- -GGCCGU--AGCUACGCGGucuCGu-ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 22514 | 0.67 | 0.507197 |
Target: 5'- gCGGCcUCGAg--GCCGaucaguuGAGCGUGACa -3' miRNA: 3'- gGCCGuAGCUacgCGGU-------CUCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 17244 | 0.68 | 0.445468 |
Target: 5'- gCGGuCAUCGGcgGCGUCAGcGCcgAUGGCa -3' miRNA: 3'- gGCC-GUAGCUa-CGCGGUCuCG--UACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 15129 | 0.67 | 0.476359 |
Target: 5'- uCCGGCAUCuuaccUGCuGCCAGAGgCGguaccGGCa -3' miRNA: 3'- -GGCCGUAGcu---ACG-CGGUCUC-GUa----CUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 19758 | 0.67 | 0.497532 |
Target: 5'- aCCGGCAUggCGGcacGCGCgAcGGGCAUGuACa -3' miRNA: 3'- -GGCCGUA--GCUa--CGCGgU-CUCGUAC-UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home