miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 5' -60 NC_003278.1 + 19315 0.66 0.435332
Target:  5'- cGCGUCGCUgccuugcauGAUGCGACgcaaGggcgCGGUGGc -3'
miRNA:   3'- cCGUAGCGG---------CUGCGCUGg---Ca---GCCGCC- -5'
11924 5' -60 NC_003278.1 + 28422 0.66 0.435332
Target:  5'- gGGCGacaGCCcGCGCGG-CGUCuGGUGGu -3'
miRNA:   3'- -CCGUag-CGGcUGCGCUgGCAG-CCGCC- -5'
11924 5' -60 NC_003278.1 + 20040 0.66 0.425963
Target:  5'- uGGCAgcCGCgGGCGacaugGACC-UCGGCGa -3'
miRNA:   3'- -CCGUa-GCGgCUGCg----CUGGcAGCCGCc -5'
11924 5' -60 NC_003278.1 + 21255 0.66 0.425963
Target:  5'- gGGCAUCgaccuGCCGGCGCGcuucAgCGacuUCGGCa- -3'
miRNA:   3'- -CCGUAG-----CGGCUGCGC----UgGC---AGCCGcc -5'
11924 5' -60 NC_003278.1 + 31839 0.66 0.425963
Target:  5'- aGGCAaCcCCGGaggaaauccgcCGCG-CCGcCGGCGGg -3'
miRNA:   3'- -CCGUaGcGGCU-----------GCGCuGGCaGCCGCC- -5'
11924 5' -60 NC_003278.1 + 7941 0.66 0.425963
Target:  5'- uGCcgUuCCGGgGCGGCCGUCGGaaugucCGGc -3'
miRNA:   3'- cCGuaGcGGCUgCGCUGGCAGCC------GCC- -5'
11924 5' -60 NC_003278.1 + 28284 0.66 0.416715
Target:  5'- gGGCAUgGgCCagguACGCccgGGCCGaggCGGCGGg -3'
miRNA:   3'- -CCGUAgC-GGc---UGCG---CUGGCa--GCCGCC- -5'
11924 5' -60 NC_003278.1 + 22281 0.66 0.407591
Target:  5'- ----cCGCCG-CGgGguGCCGUCGGCGa -3'
miRNA:   3'- ccguaGCGGCuGCgC--UGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 14406 0.66 0.407591
Target:  5'- cGGCcucgaggaCGCCGACGgGAaguUCGU-GGCGGu -3'
miRNA:   3'- -CCGua------GCGGCUGCgCU---GGCAgCCGCC- -5'
11924 5' -60 NC_003278.1 + 12187 0.66 0.406685
Target:  5'- cGcCGUCGCUGAUgaguucgGUGguACCGcCGGCGGg -3'
miRNA:   3'- cC-GUAGCGGCUG-------CGC--UGGCaGCCGCC- -5'
11924 5' -60 NC_003278.1 + 6829 0.66 0.398593
Target:  5'- uGGCAUgGCCGGCGgcgagguaGAgCuUCGcGCGGg -3'
miRNA:   3'- -CCGUAgCGGCUGCg-------CUgGcAGC-CGCC- -5'
11924 5' -60 NC_003278.1 + 16742 0.66 0.398593
Target:  5'- aGGCGUacCGCCGccaacuGCGCGACUGgccggagucCGGUGa -3'
miRNA:   3'- -CCGUA--GCGGC------UGCGCUGGCa--------GCCGCc -5'
11924 5' -60 NC_003278.1 + 17076 0.66 0.389723
Target:  5'- aGGCcgaugAUCGCgGugGCGAUgGUgcgaauggGGCGGg -3'
miRNA:   3'- -CCG-----UAGCGgCugCGCUGgCAg-------CCGCC- -5'
11924 5' -60 NC_003278.1 + 22671 0.66 0.387087
Target:  5'- cGGCG-CGCCGGacgugcucagcaucCGCGcCCGcUCaGCGGa -3'
miRNA:   3'- -CCGUaGCGGCU--------------GCGCuGGC-AGcCGCC- -5'
11924 5' -60 NC_003278.1 + 7154 0.67 0.384463
Target:  5'- aGGgAUCGCUguuGAUGUgcccggcugggaccgGGCCGUUGGCGa -3'
miRNA:   3'- -CCgUAGCGG---CUGCG---------------CUGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 4960 0.67 0.380983
Target:  5'- cGCAcccaaGCCGAguuCGGCCagGUCGGCGGg -3'
miRNA:   3'- cCGUag---CGGCUgc-GCUGG--CAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 14559 0.67 0.380116
Target:  5'- cGGCAUCGUCuACGCcacccagGACUGggugaCGGCGa -3'
miRNA:   3'- -CCGUAGCGGcUGCG-------CUGGCa----GCCGCc -5'
11924 5' -60 NC_003278.1 + 32118 0.67 0.380116
Target:  5'- cGGCuaCGCCGugGCGgaaaccacucacgACUG-CGGCGa -3'
miRNA:   3'- -CCGuaGCGGCugCGC-------------UGGCaGCCGCc -5'
11924 5' -60 NC_003278.1 + 33276 0.67 0.380116
Target:  5'- ----aCGCCGGCGauggccuCGGCCGcagcCGGCGGa -3'
miRNA:   3'- ccguaGCGGCUGC-------GCUGGCa---GCCGCC- -5'
11924 5' -60 NC_003278.1 + 2664 0.67 0.375802
Target:  5'- cGGCGUCGaauuCGAgGCGGCCGUUcuugaucacugaccaGGCc- -3'
miRNA:   3'- -CCGUAGCg---GCUgCGCUGGCAG---------------CCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.