miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 29464 0.65 0.441731
Target:  5'- gGCGuuGGCcuucucgaucacgccGCCgcgcaccgccacgucGCCCAGAaCGUAGCa -3'
miRNA:   3'- aCGCuuCCG---------------UGG---------------CGGGUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 28680 0.66 0.434822
Target:  5'- gGUGAccgAGGCGCgCGCCCuGGgcuacgucugcgaaGCAGCc -3'
miRNA:   3'- aCGCU---UCCGUG-GCGGGuCUag------------CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 8667 0.66 0.43384
Target:  5'- gGCcacuucGGCGCCGCCaccgaGGA-CGCGGUg -3'
miRNA:   3'- aCGcuu---CCGUGGCGGg----UCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 26834 0.66 0.43384
Target:  5'- gGCGucGcCACCGCCauCAGG-CGCGGUg -3'
miRNA:   3'- aCGCuuCcGUGGCGG--GUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 31395 0.66 0.43384
Target:  5'- gGCGGcucGCACuCGCCCAgcGAUgGcCAGCa -3'
miRNA:   3'- aCGCUuc-CGUG-GCGGGU--CUAgC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 32071 0.66 0.43384
Target:  5'- cGCGGccGGCACCuGCuggaCCAGAUCaaCAGCc -3'
miRNA:   3'- aCGCUu-CCGUGG-CG----GGUCUAGc-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 29882 0.66 0.43384
Target:  5'- -uUGgcGGCGCCGCCgg---CGCGGCu -3'
miRNA:   3'- acGCuuCCGUGGCGGgucuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 19429 0.66 0.427976
Target:  5'- cGCGGugcugaccugcuccaGGGCGCCGCgCUGGGU-GCGGa -3'
miRNA:   3'- aCGCU---------------UCCGUGGCG-GGUCUAgCGUCg -5'
11927 5' -58.2 NC_003278.1 + 12924 0.66 0.424093
Target:  5'- aGCGcccAGGGCGCUGaccucgaCCAGcUCGCcGCg -3'
miRNA:   3'- aCGC---UUCCGUGGCg------GGUCuAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 21745 0.66 0.424093
Target:  5'- gGUGAuGGC-CUGCgCCGGggCGCuGGCg -3'
miRNA:   3'- aCGCUuCCGuGGCG-GGUCuaGCG-UCG- -5'
11927 5' -58.2 NC_003278.1 + 8754 0.66 0.414477
Target:  5'- aUGCGAacgcuggaAGGCACgcaccgCGUCCucGGUgGCGGCg -3'
miRNA:   3'- -ACGCU--------UCCGUG------GCGGGu-CUAgCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 27674 0.66 0.404996
Target:  5'- gUGCuGggGGCGCUGUUugagCAGGUgCGCGGg -3'
miRNA:   3'- -ACG-CuuCCGUGGCGG----GUCUA-GCGUCg -5'
11927 5' -58.2 NC_003278.1 + 8186 0.66 0.404996
Target:  5'- cUGCGAacAGGUAgCCGaCgCAGGUCgGCAGg -3'
miRNA:   3'- -ACGCU--UCCGU-GGC-GgGUCUAG-CGUCg -5'
11927 5' -58.2 NC_003278.1 + 22356 0.66 0.404996
Target:  5'- gGCGGuaccgAGGaccgaGCCGagCAGAUCGguGCg -3'
miRNA:   3'- aCGCU-----UCCg----UGGCggGUCUAGCguCG- -5'
11927 5' -58.2 NC_003278.1 + 10764 0.66 0.395654
Target:  5'- cGUGAucgccuGGGCGUCGCCCuuGGcgCGCAGa -3'
miRNA:   3'- aCGCU------UCCGUGGCGGG--UCuaGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 19105 0.66 0.395654
Target:  5'- cGCGAucagggAGGCugccuUCGCCCGcuUCuGCAGCa -3'
miRNA:   3'- aCGCU------UCCGu----GGCGGGUcuAG-CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 17557 0.66 0.395654
Target:  5'- uUGCccAGGCACUgggcuugcguGCCCGGAUCGauCAGg -3'
miRNA:   3'- -ACGcuUCCGUGG----------CGGGUCUAGC--GUCg -5'
11927 5' -58.2 NC_003278.1 + 9388 0.66 0.395654
Target:  5'- cUGCGccAGGUguuguacagcGCCGCCCuGcUCGguGCu -3'
miRNA:   3'- -ACGCu-UCCG----------UGGCGGGuCuAGCguCG- -5'
11927 5' -58.2 NC_003278.1 + 6423 0.67 0.386451
Target:  5'- gGC-AAGGCAgCGCUCAaGGUCG-AGCu -3'
miRNA:   3'- aCGcUUCCGUgGCGGGU-CUAGCgUCG- -5'
11927 5' -58.2 NC_003278.1 + 16773 0.67 0.386451
Target:  5'- aGCGccuGGUACUGCUCAGugcugagcGUCGUGGUa -3'
miRNA:   3'- aCGCuu-CCGUGGCGGGUC--------UAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.