Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11933 | 5' | -62.6 | NC_003278.1 | + | 27518 | 0.66 | 0.255991 |
Target: 5'- gGCa-UCGACUG-GGGCCAGGgaGACg -3' miRNA: 3'- aCGggAGCUGGUaCCCGGUCCggCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 20991 | 0.66 | 0.252099 |
Target: 5'- cGCCCUgCGcgucgugagcaucgcGCUGUgGGGCCuGGCCGcCa -3' miRNA: 3'- aCGGGA-GC---------------UGGUA-CCCGGuCCGGCuG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 18967 | 0.66 | 0.24953 |
Target: 5'- aGCCCgaGGCCAccggcaUGGaCCcGGCCGACc -3' miRNA: 3'- aCGGGagCUGGU------ACCcGGuCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 21627 | 0.66 | 0.24953 |
Target: 5'- gGCCaugcugggCGACC-UGGGCaagAGcGCCGGCg -3' miRNA: 3'- aCGGga------GCUGGuACCCGg--UC-CGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 8066 | 0.66 | 0.24953 |
Target: 5'- cGCCgUCaACCGgaaGGGuuacgcCCAGGCCGAg -3' miRNA: 3'- aCGGgAGcUGGUa--CCC------GGUCCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9006 | 0.66 | 0.243205 |
Target: 5'- -aCCCUCGcCCggGcGGCUAuGCCGGCg -3' miRNA: 3'- acGGGAGCuGGuaC-CCGGUcCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 6819 | 0.66 | 0.243205 |
Target: 5'- aGCCC-CGGCCAacccGGGCaggugcaaGCCGGCa -3' miRNA: 3'- aCGGGaGCUGGUa---CCCGguc-----CGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9854 | 0.66 | 0.24258 |
Target: 5'- gGCCU--GGCC-UGGGCCgagugcgccgcgaAGGUCGACa -3' miRNA: 3'- aCGGGagCUGGuACCCGG-------------UCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 20266 | 0.66 | 0.239474 |
Target: 5'- gGCCCUgcucggcaacgcuggCGuCCA-GGGCagcauGGCCGGCa -3' miRNA: 3'- aCGGGA---------------GCuGGUaCCCGgu---CCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 9692 | 0.66 | 0.225027 |
Target: 5'- gGUCCUCGAUCAaGcguucgcggauGGCCAGcGCCuGGCg -3' miRNA: 3'- aCGGGAGCUGGUaC-----------CCGGUC-CGG-CUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 2542 | 0.66 | 0.225027 |
Target: 5'- cGCCCa-GGCCAgaucGGCguGGCCGGu -3' miRNA: 3'- aCGGGagCUGGUac--CCGguCCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 31801 | 0.67 | 0.219228 |
Target: 5'- gUGCCCgggacacCGGCCA-GGcGCUcgaagucgcggAGGCCGGCc -3' miRNA: 3'- -ACGGGa------GCUGGUaCC-CGG-----------UCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 18678 | 0.67 | 0.215811 |
Target: 5'- gGCCaUCGGCC-UGuaaucccuucccgccGGCCcGGCCGGCg -3' miRNA: 3'- aCGGgAGCUGGuAC---------------CCGGuCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 1308 | 0.67 | 0.202596 |
Target: 5'- aGCCCU-GGCCAcaaGGCCAGGCUu-- -3' miRNA: 3'- aCGGGAgCUGGUac-CCGGUCCGGcug -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 31185 | 0.67 | 0.202596 |
Target: 5'- nGUgUUUGuCCGcUGGGCCAGGgCGGCc -3' miRNA: 3'- aCGgGAGCuGGU-ACCCGGUCCgGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 4824 | 0.67 | 0.191614 |
Target: 5'- aGCgCCUCGGuacCCAggcuggcgGGggagucggugaugGCCAGGCCGACc -3' miRNA: 3'- aCG-GGAGCU---GGUa-------CC-------------CGGUCCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 27856 | 0.68 | 0.187069 |
Target: 5'- aGCaCUCGGCCAUGgcGGCUucguacuGGCUGACc -3' miRNA: 3'- aCGgGAGCUGGUAC--CCGGu------CCGGCUG- -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 21576 | 0.68 | 0.187069 |
Target: 5'- gGCCCgcgcUGACCA--GGCCuuGGCCGAg -3' miRNA: 3'- aCGGGa---GCUGGUacCCGGu-CCGGCUg -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 6271 | 0.68 | 0.177309 |
Target: 5'- aUGUUCUCGACCA-GGcaGCCgAGGCCGu- -3' miRNA: 3'- -ACGGGAGCUGGUaCC--CGG-UCCGGCug -5' |
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11933 | 5' | -62.6 | NC_003278.1 | + | 2632 | 0.68 | 0.172601 |
Target: 5'- aGCCaucagCG-CC-UGGGCCAGGUCGGu -3' miRNA: 3'- aCGGga---GCuGGuACCCGGUCCGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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