miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 6034 0.66 0.315323
Target:  5'- cUGCCGCCGGuGGaaguGCC-CUACgUGCCc -3'
miRNA:   3'- cAUGGCGGCCuCCg---CGGuGGUG-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 7971 0.66 0.315323
Target:  5'- -cACCGCCacGGccGCGCCAUCAUgGgCCu -3'
miRNA:   3'- caUGGCGG--CCucCGCGGUGGUGgU-GG- -5'
11946 5' -61.6 NC_003278.1 + 3286 0.66 0.315323
Target:  5'- -gACCGCaucuGGCGCCAgaucgUCACCAUCc -3'
miRNA:   3'- caUGGCGgccuCCGCGGU-----GGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 27114 0.66 0.307733
Target:  5'- -aACgCGCuCuGcGGCGCCACCuuCACCg -3'
miRNA:   3'- caUG-GCG-GcCuCCGCGGUGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 9020 0.66 0.307733
Target:  5'- -gGCUauGCCGGcGGCaCCGCCGagCACCa -3'
miRNA:   3'- caUGG--CGGCCuCCGcGGUGGUg-GUGG- -5'
11946 5' -61.6 NC_003278.1 + 4413 0.66 0.300284
Target:  5'- -cGCCGUCGaaGGGGCGaCCACgGaCgGCCg -3'
miRNA:   3'- caUGGCGGC--CUCCGC-GGUGgU-GgUGG- -5'
11946 5' -61.6 NC_003278.1 + 34585 0.66 0.300284
Target:  5'- -cGCCGCauuccuGAGGUgGCCauGCCACCAgCCg -3'
miRNA:   3'- caUGGCGgc----CUCCG-CGG--UGGUGGU-GG- -5'
11946 5' -61.6 NC_003278.1 + 7333 0.66 0.292974
Target:  5'- uGUAuCUGCgCGcAGuGCagucuGCCACCGCCGCCg -3'
miRNA:   3'- -CAU-GGCG-GCcUC-CG-----CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 8759 0.66 0.292974
Target:  5'- -gGCCGCCcucGGcGGCGCugacugcucgCACCugCugCa -3'
miRNA:   3'- caUGGCGG---CCuCCGCG----------GUGGugGugG- -5'
11946 5' -61.6 NC_003278.1 + 1128 0.66 0.292974
Target:  5'- -cGCUGCUauGGaAGGUGCCugugGCUugCGCCa -3'
miRNA:   3'- caUGGCGG--CC-UCCGCGG----UGGugGUGG- -5'
11946 5' -61.6 NC_003278.1 + 26599 0.66 0.285805
Target:  5'- cUACCcuGgCGGAcgcgaauGCGCCGCCGCCcGCCu -3'
miRNA:   3'- cAUGG--CgGCCUc------CGCGGUGGUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 32361 0.66 0.278774
Target:  5'- gGUGCaucggGCCGGcGGCGUCGaUAUCGCCg -3'
miRNA:   3'- -CAUGg----CGGCCuCCGCGGUgGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 22109 0.66 0.278774
Target:  5'- -aGCaCGCCGGgcAGGgugaucgcguCGUCGCCGCgACCg -3'
miRNA:   3'- caUG-GCGGCC--UCC----------GCGGUGGUGgUGG- -5'
11946 5' -61.6 NC_003278.1 + 8352 0.66 0.278774
Target:  5'- -cGCUGCCGcGcuGCGCCugguCUGCUACCa -3'
miRNA:   3'- caUGGCGGC-CucCGCGGu---GGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21053 0.66 0.278774
Target:  5'- uUGCCGCCgucguGGcGGUGCUgGCCGgCGCCg -3'
miRNA:   3'- cAUGGCGG-----CCuCCGCGG-UGGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 15000 0.67 0.271882
Target:  5'- ---aCGCUGGccaacuccGGCGUCACCGCCgggACCu -3'
miRNA:   3'- caugGCGGCCu-------CCGCGGUGGUGG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 15142 0.67 0.271882
Target:  5'- cUGCUGCCaGAGGCGgUACCGgCAa- -3'
miRNA:   3'- cAUGGCGGcCUCCGCgGUGGUgGUgg -5'
11946 5' -61.6 NC_003278.1 + 12774 0.67 0.265128
Target:  5'- -aGCCucugGCCGGAGGaucaGCaggcggaaAUCGCCGCCc -3'
miRNA:   3'- caUGG----CGGCCUCCg---CGg-------UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 29286 0.67 0.263128
Target:  5'- ---aCGCCGaGcAGGCGCUucuugaacucgcugGCCGCCGCg -3'
miRNA:   3'- caugGCGGC-C-UCCGCGG--------------UGGUGGUGg -5'
11946 5' -61.6 NC_003278.1 + 8113 0.67 0.25851
Target:  5'- cGUGCCGgUGGccagccAGGCGCCgagcagggcACCgaacagcauGCCGCCg -3'
miRNA:   3'- -CAUGGCgGCC------UCCGCGG---------UGG---------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.