miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11960 5' -59.3 NC_003278.1 + 3299 0.66 0.424657
Target:  5'- uGAUGCgauCGGCG-----GCCGGCuuGCCCu -3'
miRNA:   3'- gCUACG---GCCGCuaaugCGGCCG--CGGG- -5'
11960 5' -59.3 NC_003278.1 + 8950 0.66 0.424657
Target:  5'- gGAuUGCCGGCu----UGCCGuuGCCCa -3'
miRNA:   3'- gCU-ACGGCCGcuaauGCGGCcgCGGG- -5'
11960 5' -59.3 NC_003278.1 + 6579 0.66 0.424657
Target:  5'- uCGAUGCgccagagcaugaCGGUGGUgaccaccuCGUCcugGGCGCCCu -3'
miRNA:   3'- -GCUACG------------GCCGCUAau------GCGG---CCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 28182 0.66 0.41525
Target:  5'- -uGUGCCaGGUGu---CGCCGcacuugccGCGCCCg -3'
miRNA:   3'- gcUACGG-CCGCuaauGCGGC--------CGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 28634 0.66 0.41525
Target:  5'- gGgcGCUGGacaaCGA--AC-CCGGCGCCCa -3'
miRNA:   3'- gCuaCGGCC----GCUaaUGcGGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 29241 0.66 0.405972
Target:  5'- --cUGCuCGGCGuggcCGCCGGUGCg- -3'
miRNA:   3'- gcuACG-GCCGCuaauGCGGCCGCGgg -5'
11960 5' -59.3 NC_003278.1 + 21453 0.66 0.405052
Target:  5'- ---gGCCGGCcuggcccaGGgccucgGCGCCGGCcaggccgGCCCg -3'
miRNA:   3'- gcuaCGGCCG--------CUaa----UGCGGCCG-------CGGG- -5'
11960 5' -59.3 NC_003278.1 + 27 0.66 0.387813
Target:  5'- ---cGCCGGCGAaUGaGCCGauGCGgCCa -3'
miRNA:   3'- gcuaCGGCCGCUaAUgCGGC--CGCgGG- -5'
11960 5' -59.3 NC_003278.1 + 23101 0.66 0.387813
Target:  5'- aGAaGCaggaGGCaau--CGCCGGCGCCa -3'
miRNA:   3'- gCUaCGg---CCGcuaauGCGGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 4538 0.66 0.387813
Target:  5'- ---gGCCGGCuGGUga-GuUCGGCGCCUa -3'
miRNA:   3'- gcuaCGGCCG-CUAaugC-GGCCGCGGG- -5'
11960 5' -59.3 NC_003278.1 + 29886 0.66 0.387813
Target:  5'- gGAcuUGgCGGCGc---CGCCGGCGCg- -3'
miRNA:   3'- gCU--ACgGCCGCuaauGCGGCCGCGgg -5'
11960 5' -59.3 NC_003278.1 + 5507 0.66 0.387813
Target:  5'- uCGGUacgGCUGGCGAUggugccgcugACGCCGaUGCCg -3'
miRNA:   3'- -GCUA---CGGCCGCUAa---------UGCGGCcGCGGg -5'
11960 5' -59.3 NC_003278.1 + 21598 0.66 0.387813
Target:  5'- uCGAgGCCGGCGAcagccugACgGCCcGCGCUg -3'
miRNA:   3'- -GCUaCGGCCGCUaa-----UG-CGGcCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 26886 0.66 0.387813
Target:  5'- uGAUGgCGGUGGcgACGCCccuGGCGUa- -3'
miRNA:   3'- gCUACgGCCGCUaaUGCGG---CCGCGgg -5'
11960 5' -59.3 NC_003278.1 + 31863 0.66 0.378935
Target:  5'- gCGccGCCGGCGGgcgcCGaCCGGaUGCCg -3'
miRNA:   3'- -GCuaCGGCCGCUaau-GC-GGCC-GCGGg -5'
11960 5' -59.3 NC_003278.1 + 32769 0.66 0.377176
Target:  5'- aCGGUGCCGGCuGGgccgucccaGUCGGUGaCCg -3'
miRNA:   3'- -GCUACGGCCG-CUaaug-----CGGCCGCgGG- -5'
11960 5' -59.3 NC_003278.1 + 5871 0.67 0.370195
Target:  5'- ---aGUCGGCGucgGCGCCGuuGCCg -3'
miRNA:   3'- gcuaCGGCCGCuaaUGCGGCcgCGGg -5'
11960 5' -59.3 NC_003278.1 + 15916 0.67 0.370195
Target:  5'- aCGccGCCGGCGGUcuguaCUGGCGCUg -3'
miRNA:   3'- -GCuaCGGCCGCUAaugc-GGCCGCGGg -5'
11960 5' -59.3 NC_003278.1 + 7763 0.67 0.3676
Target:  5'- -uGUGCUGGCGGcacuacggucgcacCGCCGGCGUgaCCg -3'
miRNA:   3'- gcUACGGCCGCUaau-----------GCGGCCGCG--GG- -5'
11960 5' -59.3 NC_003278.1 + 9759 0.67 0.362448
Target:  5'- ---aGCCGGCGAgcaacaucaggcagAgGCUGGUcaGCCCa -3'
miRNA:   3'- gcuaCGGCCGCUaa------------UgCGGCCG--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.