miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11975 5' -55.4 NC_003278.1 + 21312 0.66 0.606826
Target:  5'- aGCGCGccggcaggucGAUGCccaGGUAGCCcAGgacGCCGGc -3'
miRNA:   3'- -UGCGC----------UUAUG---CCGUCGG-UCaa-CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 33154 0.66 0.605695
Target:  5'- -gGCGAGUuccagggugguaaACGGCcuguGCCAGgUGCCa- -3'
miRNA:   3'- ugCGCUUA-------------UGCCGu---CGGUCaACGGcc -5'
11975 5' -55.4 NC_003278.1 + 10693 0.66 0.59553
Target:  5'- uGCGcCGAAUACGGCccuGCU---UGCCGc -3'
miRNA:   3'- -UGC-GCUUAUGCCGu--CGGucaACGGCc -5'
11975 5' -55.4 NC_003278.1 + 34396 0.66 0.584266
Target:  5'- uGCGCGcAGcGCcGgGGCCAGUaGCUGGa -3'
miRNA:   3'- -UGCGC-UUaUGcCgUCGGUCAaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 31228 0.66 0.584266
Target:  5'- cUGCGAGUGCuGCA-UCAGUUGUCaGGa -3'
miRNA:   3'- uGCGCUUAUGcCGUcGGUCAACGG-CC- -5'
11975 5' -55.4 NC_003278.1 + 22735 0.66 0.573045
Target:  5'- gGCGCGGAUGCugagcacguccGGCGcGCCGcugUGCuCGGu -3'
miRNA:   3'- -UGCGCUUAUG-----------CCGU-CGGUca-ACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 17449 0.66 0.573045
Target:  5'- -aGCGAa---GGC-GCgCAGUUGCUGGg -3'
miRNA:   3'- ugCGCUuaugCCGuCG-GUCAACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 8614 0.66 0.561876
Target:  5'- cAUGCGGAUggccucagcAgGGCGGCgAcGUUGCCGcGg -3'
miRNA:   3'- -UGCGCUUA---------UgCCGUCGgU-CAACGGC-C- -5'
11975 5' -55.4 NC_003278.1 + 14163 0.66 0.561876
Target:  5'- aGCGCuGAucGCGGCgAGCgAG--GCCGGg -3'
miRNA:   3'- -UGCG-CUuaUGCCG-UCGgUCaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 29714 0.66 0.550766
Target:  5'- aGCGUGGAUuugcCGGCA-CCGGccucGCCGGu -3'
miRNA:   3'- -UGCGCUUAu---GCCGUcGGUCaa--CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 20523 0.66 0.550766
Target:  5'- uGCGCGccgucgAgGGCGGCCAGUU-CCa- -3'
miRNA:   3'- -UGCGCuua---UgCCGUCGGUCAAcGGcc -5'
11975 5' -55.4 NC_003278.1 + 22406 0.67 0.533135
Target:  5'- cACGCGGGcgaggGCGGCAucgaucacaggaugcGUCucagcaGGUUGCCGGc -3'
miRNA:   3'- -UGCGCUUa----UGCCGU---------------CGG------UCAACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 13284 0.67 0.528758
Target:  5'- gGCGuCGAcgAUGGcCAGCaGGUccGCCGGg -3'
miRNA:   3'- -UGC-GCUuaUGCC-GUCGgUCAa-CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 30824 0.67 0.522218
Target:  5'- aGCGCGAcaGCGGCcagagcggcgugaucGGUCGGUuccUGCuCGGc -3'
miRNA:   3'- -UGCGCUuaUGCCG---------------UCGGUCA---ACG-GCC- -5'
11975 5' -55.4 NC_003278.1 + 1895 0.67 0.517876
Target:  5'- gGCGUaAGUacuacaacaACGGCAGCCAc--GCCGGc -3'
miRNA:   3'- -UGCGcUUA---------UGCCGUCGGUcaaCGGCC- -5'
11975 5' -55.4 NC_003278.1 + 5128 0.67 0.517876
Target:  5'- -gGUGAccuuGUccaACuGGCuGGCCAGUUGCUGGg -3'
miRNA:   3'- ugCGCU----UA---UG-CCG-UCGGUCAACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 16895 0.67 0.507084
Target:  5'- cGCGCGc--GCGGCAGCCuGUgcagUGUCa- -3'
miRNA:   3'- -UGCGCuuaUGCCGUCGGuCA----ACGGcc -5'
11975 5' -55.4 NC_003278.1 + 19813 0.67 0.507084
Target:  5'- uCGCGcGUGCcGCcauGCCGG-UGCCGGc -3'
miRNA:   3'- uGCGCuUAUGcCGu--CGGUCaACGGCC- -5'
11975 5' -55.4 NC_003278.1 + 16877 0.67 0.507084
Target:  5'- cUGCGAAgAgGGCuucgAGCCAGUccggugcgGCCGGc -3'
miRNA:   3'- uGCGCUUaUgCCG----UCGGUCAa-------CGGCC- -5'
11975 5' -55.4 NC_003278.1 + 30856 0.67 0.50601
Target:  5'- -gGCGAu--CGGCAGCaggcguuucagcgCGGUgagGCCGGc -3'
miRNA:   3'- ugCGCUuauGCCGUCG-------------GUCAa--CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.