miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11999 5' -65.4 NC_003278.1 + 7261 0.66 0.207858
Target:  5'- uCGCgGCCGGCuauGCCgaACUCGCccagGUGCc -3'
miRNA:   3'- -GCGgCGGCCGu--UGGggUGGGCG----CGCG- -5'
11999 5' -65.4 NC_003278.1 + 29706 0.66 0.207858
Target:  5'- -uUUGCCGGCAccgGCCUCGCCgGUG-GCc -3'
miRNA:   3'- gcGGCGGCCGU---UGGGGUGGgCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 4412 0.66 0.207858
Target:  5'- uCGCCGUCgaaggGGCGACCacggaCGgCCGCaacaucgaGCGCg -3'
miRNA:   3'- -GCGGCGG-----CCGUUGGg----GUgGGCG--------CGCG- -5'
11999 5' -65.4 NC_003278.1 + 6448 0.66 0.207858
Target:  5'- uGCUGCCGGUcuaccAGCCgUAcauuuCCgGCGUGCu -3'
miRNA:   3'- gCGGCGGCCG-----UUGGgGU-----GGgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 4256 0.66 0.207858
Target:  5'- aCGCUGCCGuCGAaauUCCCAUCCGUGacaacCGCc -3'
miRNA:   3'- -GCGGCGGCcGUU---GGGGUGGGCGC-----GCG- -5'
11999 5' -65.4 NC_003278.1 + 12341 0.66 0.207858
Target:  5'- gCGCCGcCCGGUauGACgCCG-CCGUGgGUa -3'
miRNA:   3'- -GCGGC-GGCCG--UUGgGGUgGGCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 33209 0.66 0.207858
Target:  5'- -uCCGCCGGCugcggccgaGGCCaUCGCCgGCGUGa -3'
miRNA:   3'- gcGGCGGCCG---------UUGG-GGUGGgCGCGCg -5'
11999 5' -65.4 NC_003278.1 + 7622 0.66 0.202616
Target:  5'- uGCCGCgagguagaaacCGGUcGCUCC-CCagGCGCGCu -3'
miRNA:   3'- gCGGCG-----------GCCGuUGGGGuGGg-CGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 31619 0.66 0.202616
Target:  5'- uGCUGCggccugggCGGCGGCgCCGCaggcuucaaCCGgGCGCg -3'
miRNA:   3'- gCGGCG--------GCCGUUGgGGUG---------GGCgCGCG- -5'
11999 5' -65.4 NC_003278.1 + 30508 0.66 0.19749
Target:  5'- gGCCGaCgCGGCAACCCUGCgCGaCcUGCu -3'
miRNA:   3'- gCGGC-G-GCCGUUGGGGUGgGC-GcGCG- -5'
11999 5' -65.4 NC_003278.1 + 6733 0.66 0.19749
Target:  5'- cCGaCCagGCCGaCAugCCCgacgaaGCCCGCGCGa -3'
miRNA:   3'- -GC-GG--CGGCcGUugGGG------UGGGCGCGCg -5'
11999 5' -65.4 NC_003278.1 + 31207 0.66 0.19749
Target:  5'- cCGCCGCCaGGCuGCUCCgGgCUGCGaguGCu -3'
miRNA:   3'- -GCGGCGG-CCGuUGGGG-UgGGCGCg--CG- -5'
11999 5' -65.4 NC_003278.1 + 34336 0.66 0.192476
Target:  5'- aGCUaCUGGC--CCCgGCgCUGCGCGCa -3'
miRNA:   3'- gCGGcGGCCGuuGGGgUG-GGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 6082 0.66 0.192476
Target:  5'- -uCCaCCGGCGGCaggCCGCCCaUGCGCu -3'
miRNA:   3'- gcGGcGGCCGUUGg--GGUGGGcGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 30275 0.66 0.192476
Target:  5'- cCGCUGuCCGaGCAccAgCUCGCCUGCGCucaGCa -3'
miRNA:   3'- -GCGGC-GGC-CGU--UgGGGUGGGCGCG---CG- -5'
11999 5' -65.4 NC_003278.1 + 2554 0.66 0.191981
Target:  5'- aGCCGCUcgaggGGCAGaCCCCcgcgaauACCgGC-CGCa -3'
miRNA:   3'- gCGGCGG-----CCGUU-GGGG-------UGGgCGcGCG- -5'
11999 5' -65.4 NC_003278.1 + 2482 0.66 0.18806
Target:  5'- cCGCCGCCaGCAGCCaguuacaguccaguCCGCCCagGaaggcgaguucauccCGCGCc -3'
miRNA:   3'- -GCGGCGGcCGUUGG--------------GGUGGG--C---------------GCGCG- -5'
11999 5' -65.4 NC_003278.1 + 23164 0.66 0.187575
Target:  5'- gCGaCCGCCaGaGCGcccugcGCgCCGCCCGCGC-Cg -3'
miRNA:   3'- -GC-GGCGG-C-CGU------UGgGGUGGGCGCGcG- -5'
11999 5' -65.4 NC_003278.1 + 22920 0.66 0.187575
Target:  5'- gGCCaccgugaaaGCCGGCugccuGCUCUGCCUGCG-GCc -3'
miRNA:   3'- gCGG---------CGGCCGu----UGGGGUGGGCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 19253 0.66 0.187575
Target:  5'- gCGUCGCaucaugcaaGGCAGCgacgcgaCgGCCCGgGCGCu -3'
miRNA:   3'- -GCGGCGg--------CCGUUGg------GgUGGGCgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.