miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12020 3' -47.8 NC_003278.1 + 7711 0.66 0.96331
Target:  5'- gGGCCGUcguccgagacGAGcgCGcCUGGGgaGCGACCg -3'
miRNA:   3'- gUUGGCG----------UUUaaGCuGACCU--UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 20797 0.66 0.96331
Target:  5'- -cGCCGCGuuUUCGGCgcuGAUGGCUa -3'
miRNA:   3'- guUGGCGUuuAAGCUGaccUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 28037 0.66 0.96331
Target:  5'- aCAugCGCAAGggCGAgUGcccGACGugCg -3'
miRNA:   3'- -GUugGCGUUUaaGCUgACc--UUGCugG- -5'
12020 3' -47.8 NC_003278.1 + 33157 0.66 0.959251
Target:  5'- -cGCgGCGAGUUCcaGGgUGGuaAACGGCCu -3'
miRNA:   3'- guUGgCGUUUAAG--CUgACC--UUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 7225 0.66 0.955343
Target:  5'- uCAACCGCGAGcugCGGgcCUGGcgccuugagaagaucGCGGCCg -3'
miRNA:   3'- -GUUGGCGUUUaa-GCU--GACCu--------------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 22217 0.66 0.954441
Target:  5'- aGGCCGUAGAUgcguccggugcccUCGACcaUGGGccaGGCCg -3'
miRNA:   3'- gUUGGCGUUUA-------------AGCUG--ACCUug-CUGG- -5'
12020 3' -47.8 NC_003278.1 + 33869 0.66 0.952133
Target:  5'- cCAGCCGCGuggaaacccacauccGAccUCG-CUGGggUGACa -3'
miRNA:   3'- -GUUGGCGU---------------UUa-AGCuGACCuuGCUGg -5'
12020 3' -47.8 NC_003278.1 + 8176 0.66 0.952133
Target:  5'- gUAGCCgacGCAGG-UCGGCaGGAucagcgacagcaggcGCGACCa -3'
miRNA:   3'- -GUUGG---CGUUUaAGCUGaCCU---------------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 17024 0.66 0.950232
Target:  5'- -cACCGCGAucaUCGGCcUGGuAGCcACCg -3'
miRNA:   3'- guUGGCGUUua-AGCUG-ACC-UUGcUGG- -5'
12020 3' -47.8 NC_003278.1 + 4129 0.66 0.945258
Target:  5'- gGACCGCGA---CGGaUGGGACcgGGCCg -3'
miRNA:   3'- gUUGGCGUUuaaGCUgACCUUG--CUGG- -5'
12020 3' -47.8 NC_003278.1 + 32225 0.66 0.945258
Target:  5'- gAAgCGCuuccgCGACUGGGccaGACCg -3'
miRNA:   3'- gUUgGCGuuuaaGCUGACCUug-CUGG- -5'
12020 3' -47.8 NC_003278.1 + 19247 0.66 0.945258
Target:  5'- gCAGCUGCAGGUcauucgccaUCGGC-GGAACu-CCg -3'
miRNA:   3'- -GUUGGCGUUUA---------AGCUGaCCUUGcuGG- -5'
12020 3' -47.8 NC_003278.1 + 13214 0.67 0.93997
Target:  5'- aCAACgGCAGg--CGAUgGGcuGACGGCCg -3'
miRNA:   3'- -GUUGgCGUUuaaGCUGaCC--UUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 30459 0.67 0.93997
Target:  5'- uCAACCucaaCGAGUUCGugaaGCUGGccgcCGACCa -3'
miRNA:   3'- -GUUGGc---GUUUAAGC----UGACCuu--GCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32780 0.67 0.928437
Target:  5'- uGGCCGCGAucacggugcCGGCUGGGcCGuCCc -3'
miRNA:   3'- gUUGGCGUUuaa------GCUGACCUuGCuGG- -5'
12020 3' -47.8 NC_003278.1 + 21081 0.67 0.928437
Target:  5'- -cGCCGCGuaccuGAUcuaUCGcaACUGGGACG-CCg -3'
miRNA:   3'- guUGGCGU-----UUA---AGC--UGACCUUGCuGG- -5'
12020 3' -47.8 NC_003278.1 + 21615 0.67 0.926596
Target:  5'- cCAGCCGCugcuggccauGCUGG-GCGACCu -3'
miRNA:   3'- -GUUGGCGuuuaagc---UGACCuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 6993 0.67 0.922188
Target:  5'- uCAACCGcCAGAggCGGucaguuucuuCUGGAgccguucgGCGGCCu -3'
miRNA:   3'- -GUUGGC-GUUUaaGCU----------GACCU--------UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 7900 0.67 0.915619
Target:  5'- gAACgGCAGAUggUGAaccuaUGGGACuGACCa -3'
miRNA:   3'- gUUGgCGUUUAa-GCUg----ACCUUG-CUGG- -5'
12020 3' -47.8 NC_003278.1 + 20220 0.67 0.914944
Target:  5'- uCGGCCGCGAGUaCGGCcagagccUGGAgACGgucACCa -3'
miRNA:   3'- -GUUGGCGUUUAaGCUG-------ACCU-UGC---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.