miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 28088 0.66 0.404544
Target:  5'- uGGUCGAcagccccugguucauCCGCugcgggcGCGGCAAguGCgGCGa -3'
miRNA:   3'- -CCGGCU---------------GGCGu------CGCUGUUguCGgCGC- -5'
12021 5' -59.6 NC_003278.1 + 14915 0.66 0.40087
Target:  5'- aGGCCGGuaGUAGCc----CGGCCGCGu -3'
miRNA:   3'- -CCGGCUggCGUCGcuguuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 23229 0.66 0.40087
Target:  5'- cGGgCGGCgCGCAG-GGCGcucugGCGGUCGCu -3'
miRNA:   3'- -CCgGCUG-GCGUCgCUGU-----UGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 31859 0.66 0.40087
Target:  5'- cGCCGcGCCGCcggcgGGCGcCGACcggauGCCGUGu -3'
miRNA:   3'- cCGGC-UGGCG-----UCGCuGUUGu----CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 23425 0.66 0.40087
Target:  5'- uGGCCGACgacaccgGCGGCGACuACAcCgGCa -3'
miRNA:   3'- -CCGGCUGg------CGUCGCUGuUGUcGgCGc -5'
12021 5' -59.6 NC_003278.1 + 9798 0.66 0.399955
Target:  5'- uGGUaagCGGCCGCuccGGUGAUAgcggggcgcuguuGCAGCCgGCGa -3'
miRNA:   3'- -CCG---GCUGGCG---UCGCUGU-------------UGUCGG-CGC- -5'
12021 5' -59.6 NC_003278.1 + 8464 0.66 0.398129
Target:  5'- aGGCUGgcgagcaacgagacGCUGCGGCGGaAGCGggcGCCGCa -3'
miRNA:   3'- -CCGGC--------------UGGCGUCGCUgUUGU---CGGCGc -5'
12021 5' -59.6 NC_003278.1 + 11873 0.66 0.391779
Target:  5'- cGGCUGGCUGCcuuG-GGCAuc-GCCGCGg -3'
miRNA:   3'- -CCGGCUGGCGu--CgCUGUuguCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 19271 0.66 0.391779
Target:  5'- uGUCGAUCGCgcugAGCaGCAcgcGCAGCUGCa -3'
miRNA:   3'- cCGGCUGGCG----UCGcUGU---UGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 21637 0.66 0.382823
Target:  5'- uGGCgUGAUCGCAG-GGCGGgAGCCuCGg -3'
miRNA:   3'- -CCG-GCUGGCGUCgCUGUUgUCGGcGC- -5'
12021 5' -59.6 NC_003278.1 + 27397 0.66 0.382823
Target:  5'- uGGCCugcagguacGCUGCGGCGGCuugcuGCAugguGCUGCGg -3'
miRNA:   3'- -CCGGc--------UGGCGUCGCUGu----UGU----CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 31203 0.66 0.382823
Target:  5'- aGGCCcGCCGCcaggcugcuccgGGCuGCGAguGCUGCa -3'
miRNA:   3'- -CCGGcUGGCG------------UCGcUGUUguCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 14645 0.66 0.382823
Target:  5'- uGGUCGGCgGUGGCGAUuugucuGCGGaUCGCa -3'
miRNA:   3'- -CCGGCUGgCGUCGCUGu-----UGUC-GGCGc -5'
12021 5' -59.6 NC_003278.1 + 7896 0.66 0.380163
Target:  5'- aGGCCaggggggaggguggGGCCGUGGuCGGCca-GGCCGUGg -3'
miRNA:   3'- -CCGG--------------CUGGCGUC-GCUGuugUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 33211 0.66 0.374004
Target:  5'- cGCCGGCUGCGGCcgaGGCcAUcGCCgGCGu -3'
miRNA:   3'- cCGGCUGGCGUCG---CUGuUGuCGG-CGC- -5'
12021 5' -59.6 NC_003278.1 + 9769 0.66 0.374004
Target:  5'- uGGCUGucCCGCcGUGACGcccuGCAGCCuggagucaGCGg -3'
miRNA:   3'- -CCGGCu-GGCGuCGCUGU----UGUCGG--------CGC- -5'
12021 5' -59.6 NC_003278.1 + 34412 0.66 0.374004
Target:  5'- uGGCCugcuGCUGCAGUGcgcGCAGC-GCCGgGg -3'
miRNA:   3'- -CCGGc---UGGCGUCGC---UGUUGuCGGCgC- -5'
12021 5' -59.6 NC_003278.1 + 30873 0.66 0.37313
Target:  5'- uGGCCG-CUGUcgcgcugGGCGAuCGGCAGCagGCGu -3'
miRNA:   3'- -CCGGCuGGCG-------UCGCU-GUUGUCGg-CGC- -5'
12021 5' -59.6 NC_003278.1 + 30249 0.66 0.365325
Target:  5'- uGGUCGACgCGCuGCGcCugguGguGCCGCu -3'
miRNA:   3'- -CCGGCUG-GCGuCGCuGu---UguCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 4477 0.66 0.362748
Target:  5'- cGGCCGuCCGUGGUcgccccuucGACGGCGaugcggaaccauuuGCUGCGg -3'
miRNA:   3'- -CCGGCuGGCGUCG---------CUGUUGU--------------CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.