miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12022 3' -57.5 NC_003278.1 + 18218 0.66 0.470375
Target:  5'- --aCGACGGCggUAGCUACCaGGGCGu -3'
miRNA:   3'- ucgGCUGUUGgaGUUGGUGGaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 32073 0.66 0.454091
Target:  5'- cGGCCGGC-ACCUgcuggaccagaucaaCAGCCugCUcGGUGg -3'
miRNA:   3'- -UCGGCUGuUGGA---------------GUUGGugGAcCCGC- -5'
12022 3' -57.5 NC_003278.1 + 20030 0.66 0.450069
Target:  5'- uAGCCGguGCGGCC-CAggaaguACUggcCCUGGGCGa -3'
miRNA:   3'- -UCGGC--UGUUGGaGU------UGGu--GGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 7425 0.66 0.450069
Target:  5'- cAGCgG-UAGCgCUCGGCCACUUcGGCGg -3'
miRNA:   3'- -UCGgCuGUUG-GAGUUGGUGGAcCCGC- -5'
12022 3' -57.5 NC_003278.1 + 33317 0.66 0.450069
Target:  5'- aGGUcuCGcCAGCCUCAGCCAacaaCaGGGUGg -3'
miRNA:   3'- -UCG--GCuGUUGGAGUUGGUg---GaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 28193 0.66 0.430254
Target:  5'- cGCCGGCcACCgaCAaggaacccGCCGCCUcggcccGGGCGu -3'
miRNA:   3'- uCGGCUGuUGGa-GU--------UGGUGGA------CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 7447 0.67 0.420541
Target:  5'- --aCGACuACCgccgCGACCAgCgCUGGGCGa -3'
miRNA:   3'- ucgGCUGuUGGa---GUUGGU-G-GACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 8122 0.67 0.420541
Target:  5'- uGCCGACcuGCgUCGGCUACCUGuucGCa -3'
miRNA:   3'- uCGGCUGu-UGgAGUUGGUGGACc--CGc -5'
12022 3' -57.5 NC_003278.1 + 21266 0.67 0.410961
Target:  5'- uGCCGGCGcGCUUCAGCgACUUcGGCa -3'
miRNA:   3'- uCGGCUGU-UGGAGUUGgUGGAcCCGc -5'
12022 3' -57.5 NC_003278.1 + 11856 0.67 0.410961
Target:  5'- -aCCGGCGACCUgcugaccggcUGGCUGCCUuGGGCa -3'
miRNA:   3'- ucGGCUGUUGGA----------GUUGGUGGA-CCCGc -5'
12022 3' -57.5 NC_003278.1 + 13282 0.67 0.401518
Target:  5'- cGUCGACGaugGCCagCAGguCCGCCgGGGCGc -3'
miRNA:   3'- uCGGCUGU---UGGa-GUU--GGUGGaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 5830 0.67 0.401518
Target:  5'- cGCCGACuacaagAACCUCGACgC-CCUGGuGUu -3'
miRNA:   3'- uCGGCUG------UUGGAGUUG-GuGGACC-CGc -5'
12022 3' -57.5 NC_003278.1 + 8251 0.67 0.401518
Target:  5'- gGGUCGACAaggucgACUUCGACgACCUcuGGCGc -3'
miRNA:   3'- -UCGGCUGU------UGGAGUUGgUGGAc-CCGC- -5'
12022 3' -57.5 NC_003278.1 + 26907 0.67 0.401518
Target:  5'- uGCgGuCGACCUCAcCgCGCCUGauGGCGg -3'
miRNA:   3'- uCGgCuGUUGGAGUuG-GUGGAC--CCGC- -5'
12022 3' -57.5 NC_003278.1 + 12163 0.67 0.392214
Target:  5'- cGUCGGCGACaUCAcaCACCaGGGCGa -3'
miRNA:   3'- uCGGCUGUUGgAGUugGUGGaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 12622 0.67 0.383051
Target:  5'- gAGCCGcACAACCUgAGCaucccccuGCagaUGGGCGc -3'
miRNA:   3'- -UCGGC-UGUUGGAgUUGg-------UGg--ACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 5910 0.67 0.383051
Target:  5'- uGCUGACcACgUCGAaCACCaGGGCGu -3'
miRNA:   3'- uCGGCUGuUGgAGUUgGUGGaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 13180 0.67 0.383051
Target:  5'- cGCCGACGcgACCgUCGGCgGCgC-GGGCGu -3'
miRNA:   3'- uCGGCUGU--UGG-AGUUGgUG-GaCCCGC- -5'
12022 3' -57.5 NC_003278.1 + 33753 0.67 0.383051
Target:  5'- cAGCCGAC-ACUUCccgGACuCACCccGGGUGa -3'
miRNA:   3'- -UCGGCUGuUGGAG---UUG-GUGGa-CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 17824 0.68 0.374032
Target:  5'- uGGCCGACAcuaucGCCgaagcGCaCAUgUGGGCGg -3'
miRNA:   3'- -UCGGCUGU-----UGGagu--UG-GUGgACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.