miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12034 3' -57.9 NC_003278.1 + 18992 0.66 0.448245
Target:  5'- gGCCGaCCu--CCUU-GCCugcGGCCAGGUGa -3'
miRNA:   3'- -CGGC-GGuguGGAAgCGG---UCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 6968 0.66 0.448245
Target:  5'- aCC-CCGCGCCc-CGCCGGCUGGGg- -3'
miRNA:   3'- cGGcGGUGUGGaaGCGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 31962 0.66 0.43829
Target:  5'- gGCCGCUgGCGCCUUUGCagGGCgAGcUGa -3'
miRNA:   3'- -CGGCGG-UGUGGAAGCGg-UCGgUCuAC- -5'
12034 3' -57.9 NC_003278.1 + 17171 0.66 0.428463
Target:  5'- cGCCGaCCAgGCCaaCGCC-GCCAcuguGGUGg -3'
miRNA:   3'- -CGGC-GGUgUGGaaGCGGuCGGU----CUAC- -5'
12034 3' -57.9 NC_003278.1 + 18936 0.66 0.428463
Target:  5'- cCUGCCGCGCaucaGCCAGCCGa--- -3'
miRNA:   3'- cGGCGGUGUGgaagCGGUCGGUcuac -5'
12034 3' -57.9 NC_003278.1 + 22017 0.66 0.428463
Target:  5'- aGCCGgCGCGCCagUUCGUCGGUCGcGGc- -3'
miRNA:   3'- -CGGCgGUGUGG--AAGCGGUCGGU-CUac -5'
12034 3' -57.9 NC_003278.1 + 8399 0.66 0.418767
Target:  5'- uCCGCCGCAgCgucucguugcUCGCCAGCCu---- -3'
miRNA:   3'- cGGCGGUGUgGa---------AGCGGUCGGucuac -5'
12034 3' -57.9 NC_003278.1 + 14643 0.66 0.409206
Target:  5'- uCCGCgGCaACCUUCGCCguccccAGUCcuGGGUGg -3'
miRNA:   3'- cGGCGgUG-UGGAAGCGG------UCGG--UCUAC- -5'
12034 3' -57.9 NC_003278.1 + 18339 0.66 0.409206
Target:  5'- uGCCGCCcccgcggaAgGCCUccaucUUGCgGGCCAGcgGg -3'
miRNA:   3'- -CGGCGG--------UgUGGA-----AGCGgUCGGUCuaC- -5'
12034 3' -57.9 NC_003278.1 + 14201 0.66 0.409206
Target:  5'- cGCUGCCGCGCCgaUGUCGGUgagCAGGc- -3'
miRNA:   3'- -CGGCGGUGUGGaaGCGGUCG---GUCUac -5'
12034 3' -57.9 NC_003278.1 + 16750 0.66 0.409206
Target:  5'- cGCCGCCaACugCg-CGaCUGGCCGGAg- -3'
miRNA:   3'- -CGGCGG-UGugGaaGC-GGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 6933 0.67 0.381355
Target:  5'- cCCGCCGCACUUgUCGUgCAGUUGGAUc -3'
miRNA:   3'- cGGCGGUGUGGA-AGCG-GUCGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 30484 0.67 0.372357
Target:  5'- gGCCGCCG-ACCacCGCCAGa-AGGUGg -3'
miRNA:   3'- -CGGCGGUgUGGaaGCGGUCggUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 4744 0.67 0.372357
Target:  5'- gGCCugGCCAuCACCgacuccccCGCCAGCCuGGGUa -3'
miRNA:   3'- -CGG--CGGU-GUGGaa------GCGGUCGG-UCUAc -5'
12034 3' -57.9 NC_003278.1 + 9035 0.67 0.370575
Target:  5'- aCCGCCgaGCACCagCGCCuggcgaacgcucGCCAGAUc -3'
miRNA:   3'- cGGCGG--UGUGGaaGCGGu-----------CGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 32065 0.67 0.363504
Target:  5'- aCCGggucaucagcCCAUGCC-UCGCCcaucAGCCAGAUGc -3'
miRNA:   3'- cGGC----------GGUGUGGaAGCGG----UCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 15636 0.67 0.363504
Target:  5'- cGUCGCguUGCCUUCGC-GGUCGGAUa -3'
miRNA:   3'- -CGGCGguGUGGAAGCGgUCGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 19739 0.67 0.354798
Target:  5'- cGCUGCCGCGCUg--GCCGGCacCGGcAUGg -3'
miRNA:   3'- -CGGCGGUGUGGaagCGGUCG--GUC-UAC- -5'
12034 3' -57.9 NC_003278.1 + 32285 0.68 0.338665
Target:  5'- uGCCGCUGC-CCggcgauaucgacgcCGCCGGCCcGAUGc -3'
miRNA:   3'- -CGGCGGUGuGGaa------------GCGGUCGGuCUAC- -5'
12034 3' -57.9 NC_003278.1 + 20831 0.68 0.337831
Target:  5'- aGCCuuGCCAuCACCcUCGCCggcauucucGGCCcGAUGa -3'
miRNA:   3'- -CGG--CGGU-GUGGaAGCGG---------UCGGuCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.