Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 12110 | 5' | -56.6 | NC_003309.1 | + | 19961 | 0.72 | 0.314467 |
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Target: 5'- gCCu-GCGCGCGAuccgcuUCGA-CGCGCGCGa -3' miRNA: 3'- aGGcuCGUGUGCU------AGCUaGCGCGCGC- -5' |
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| 12110 | 5' | -56.6 | NC_003309.1 | + | 49468 | 0.73 | 0.292259 |
|
Target: 5'- gCCGAGCACGCGcgaaugcCGAUUGCGaUGCa -3' miRNA: 3'- aGGCUCGUGUGCua-----GCUAGCGC-GCGc -5' |
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| 12110 | 5' | -56.6 | NC_003309.1 | + | 37329 | 0.74 | 0.251557 |
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Target: 5'- aUCaCGGGCGucuaccUGCGcgCGAUCGUGCGCGa -3' miRNA: 3'- -AG-GCUCGU------GUGCuaGCUAGCGCGCGC- -5' |
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| 12110 | 5' | -56.6 | NC_003309.1 | + | 52698 | 0.74 | 0.251557 |
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Target: 5'- cUCCGAGUugGCGAUUGG-CGUGUGUu -3' miRNA: 3'- -AGGCUCGugUGCUAGCUaGCGCGCGc -5' |
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| 12110 | 5' | -56.6 | NC_003309.1 | + | 44775 | 0.75 | 0.227098 |
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Target: 5'- aCCGAGCGCGCGAggcaaauagUCGA--GCGCGUa -3' miRNA: 3'- aGGCUCGUGUGCU---------AGCUagCGCGCGc -5' |
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| 12110 | 5' | -56.6 | NC_003309.1 | + | 7667 | 1.08 | 0.000964 |
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Target: 5'- cUCCGAGCACACGAUCGAUCGCGCGCGc -3' miRNA: 3'- -AGGCUCGUGUGCUAGCUAGCGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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