miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12141 5' -52.6 NC_003309.1 + 13004 0.66 0.864816
Target:  5'- cGCcccGCCUGUCGCGa-GAUGAaaGCCa -3'
miRNA:   3'- uCGuuuUGGGCGGCGCagCUACU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 43658 0.66 0.863993
Target:  5'- cAGCGuguugauGAACUCGCgcaGCGUCGGUuccuGGCCg -3'
miRNA:   3'- -UCGU-------UUUGGGCGg--CGCAGCUAc---UUGG- -5'
12141 5' -52.6 NC_003309.1 + 26754 0.66 0.847888
Target:  5'- cGGCGAAGCCCGCC-UGaCcuUGAACg -3'
miRNA:   3'- -UCGUUUUGGGCGGcGCaGcuACUUGg -5'
12141 5' -52.6 NC_003309.1 + 10056 0.66 0.847888
Target:  5'- uGCc--GCCCGCCGCGcgcgucagcgccUCGAcGAgauuACCg -3'
miRNA:   3'- uCGuuuUGGGCGGCGC------------AGCUaCU----UGG- -5'
12141 5' -52.6 NC_003309.1 + 34534 0.66 0.847888
Target:  5'- uAGCGAGcACCCGUCGaugugggcggcCGUCGAaucgauUGcGCCg -3'
miRNA:   3'- -UCGUUU-UGGGCGGC-----------GCAGCU------ACuUGG- -5'
12141 5' -52.6 NC_003309.1 + 17397 0.66 0.847016
Target:  5'- cAGCGAa--CCGuCCGCGuucuggaUCGGUGuGCCg -3'
miRNA:   3'- -UCGUUuugGGC-GGCGC-------AGCUACuUGG- -5'
12141 5' -52.6 NC_003309.1 + 47552 0.66 0.839069
Target:  5'- cGCAAua-CCGCUuCGUCGAUGcaguCCg -3'
miRNA:   3'- uCGUUuugGGCGGcGCAGCUACuu--GG- -5'
12141 5' -52.6 NC_003309.1 + 23435 0.66 0.839069
Target:  5'- gAGCAGGucGCCCaaucgaGCCGC-UCGAUGuACg -3'
miRNA:   3'- -UCGUUU--UGGG------CGGCGcAGCUACuUGg -5'
12141 5' -52.6 NC_003309.1 + 43442 0.66 0.830026
Target:  5'- cGCGcAGCCgCGCCGCGa-GAUuGAACa -3'
miRNA:   3'- uCGUuUUGG-GCGGCGCagCUA-CUUGg -5'
12141 5' -52.6 NC_003309.1 + 37968 0.67 0.820769
Target:  5'- cGCAGuuccccGCUCGCCGCG-CGcgGGAUUu -3'
miRNA:   3'- uCGUUu-----UGGGCGGCGCaGCuaCUUGG- -5'
12141 5' -52.6 NC_003309.1 + 7187 0.67 0.801651
Target:  5'- cGUAAAGCCUGCCGuCGUaaCGAauacgcaucUGGucGCCg -3'
miRNA:   3'- uCGUUUUGGGCGGC-GCA--GCU---------ACU--UGG- -5'
12141 5' -52.6 NC_003309.1 + 45585 0.67 0.801651
Target:  5'- cGCAGAGCCCGUaUGCGgaCGAgcauGCCg -3'
miRNA:   3'- uCGUUUUGGGCG-GCGCa-GCUacu-UGG- -5'
12141 5' -52.6 NC_003309.1 + 46078 0.67 0.801651
Target:  5'- uAGCAuccucGGugUgGCCGaCGUCGAgcaugcGAGCCa -3'
miRNA:   3'- -UCGU-----UUugGgCGGC-GCAGCUa-----CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 12619 0.67 0.791812
Target:  5'- cGCGcGACCUgcuccgccucgGCCGUGUUGAUGcGCUc -3'
miRNA:   3'- uCGUuUUGGG-----------CGGCGCAGCUACuUGG- -5'
12141 5' -52.6 NC_003309.1 + 16545 0.67 0.791812
Target:  5'- cGCcccACaCCGCgCGCGUCGAUaggcGACCg -3'
miRNA:   3'- uCGuuuUG-GGCG-GCGCAGCUAc---UUGG- -5'
12141 5' -52.6 NC_003309.1 + 4143 0.67 0.781801
Target:  5'- cGCGcu-CCCGCCGUugcuGUCGAUgucGAGCa -3'
miRNA:   3'- uCGUuuuGGGCGGCG----CAGCUA---CUUGg -5'
12141 5' -52.6 NC_003309.1 + 40501 0.68 0.771631
Target:  5'- uGCGGAcgugguCUgGCCGCGgCGAggGAGCCa -3'
miRNA:   3'- uCGUUUu-----GGgCGGCGCaGCUa-CUUGG- -5'
12141 5' -52.6 NC_003309.1 + 10257 0.68 0.771631
Target:  5'- cGGCGAuccGCCCaGCCGCGagCGAcacGCCg -3'
miRNA:   3'- -UCGUUu--UGGG-CGGCGCa-GCUacuUGG- -5'
12141 5' -52.6 NC_003309.1 + 30379 0.68 0.771631
Target:  5'- aAGCGAAaaagGCCgGCCuCGUCGG-GAAUCc -3'
miRNA:   3'- -UCGUUU----UGGgCGGcGCAGCUaCUUGG- -5'
12141 5' -52.6 NC_003309.1 + 525 0.68 0.771631
Target:  5'- aGGCGcugccGGCUCGCCGgGUCGAgccccagcauUGcGCCg -3'
miRNA:   3'- -UCGUu----UUGGGCGGCgCAGCU----------ACuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.