Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 12741 | 0.66 | 0.763279 |
Target: 5'- uGCGUUCGccAG-ACGCCGAAAgGuuGuCGUa -3' miRNA: 3'- -CGCGAGU--UCuUGCGGCUUU-CggC-GCA- -5' |
|||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 11481 | 0.75 | 0.281377 |
Target: 5'- uGCGgUCAAGAGCGCCGucGAGaCUGCa- -3' miRNA: 3'- -CGCgAGUUCUUGCGGCu-UUC-GGCGca -5' |
|||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 8332 | 0.7 | 0.556925 |
Target: 5'- gGCGCUCGuuacgguGAcCGUCGGcgggGAGCUGCGUc -3' miRNA: 3'- -CGCGAGUu------CUuGCGGCU----UUCGGCGCA- -5' |
|||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 6578 | 0.69 | 0.58968 |
Target: 5'- aCGCUCAGGA--GCCGAAcuGGCacacaGCGUc -3' miRNA: 3'- cGCGAGUUCUugCGGCUU--UCGg----CGCA- -5' |
|||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 5174 | 0.66 | 0.783494 |
Target: 5'- gGCGCagaucgUCGAucGCGCCGcuuaagcuaucAGGCCGCGUu -3' miRNA: 3'- -CGCG------AGUUcuUGCGGCu----------UUCGGCGCA- -5' |
|||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 5115 | 0.69 | 0.58968 |
Target: 5'- gGUGUcgaUCGAGAucACGCCGu-AGUCGCGg -3' miRNA: 3'- -CGCG---AGUUCU--UGCGGCuuUCGGCGCa -5' |
|||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 2074 | 0.74 | 0.311077 |
Target: 5'- aCGgUUGAGAACGUCGAgcgaAAGCCGUGUg -3' miRNA: 3'- cGCgAGUUCUUGCGGCU----UUCGGCGCA- -5' |
|||||||
12336 | 5' | -54.3 | NC_003324.1 | + | 1154 | 0.78 | 0.200329 |
Target: 5'- aCGCUCGGGGcgaGCgGGAAGCCGCGa -3' miRNA: 3'- cGCGAGUUCUug-CGgCUUUCGGCGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home