Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12349 | 5' | -55.9 | NC_003324.1 | + | 18110 | 0.66 | 0.681699 |
|
Target: 5'- cGCCUaUCgcauggCCCGUGGCGcCgGCCAa -3' miRNA: 3'- uCGGA-AGauaa--GGGCGCCGUuG-CGGU- -5' |
|||||||
| 12349 | 5' | -55.9 | NC_003324.1 | + | 11573 | 0.75 | 0.213701 |
|
Target: 5'- cAGCCgaugCUGcUCCCGCGGCuccUGCCGg -3' miRNA: 3'- -UCGGaa--GAUaAGGGCGCCGuu-GCGGU- -5' |
|||||||
| 12349 | 5' | -55.9 | NC_003324.1 | + | 9639 | 0.67 | 0.571714 |
|
Target: 5'- gGGCCaaca----CCGcCGGCAACGCCAa -3' miRNA: 3'- -UCGGaagauaagGGC-GCCGUUGCGGU- -5' |
|||||||
| 12349 | 5' | -55.9 | NC_003324.1 | + | 9121 | 0.67 | 0.582637 |
|
Target: 5'- aAGCuCUacUUUAcUCCCgGCGGCAaACGCCu -3' miRNA: 3'- -UCG-GA--AGAUaAGGG-CGCCGU-UGCGGu -5' |
|||||||
| 12349 | 5' | -55.9 | NC_003324.1 | + | 7875 | 0.72 | 0.329975 |
|
Target: 5'- aAGCCU--UGUUCgCCGCGGCGGCaaaGCCc -3' miRNA: 3'- -UCGGAagAUAAG-GGCGCCGUUG---CGGu -5' |
|||||||
| 12349 | 5' | -55.9 | NC_003324.1 | + | 3179 | 0.72 | 0.321205 |
|
Target: 5'- cGCUUUCUGUUCgCCucgaauggcaagaGCGGgAGCGCCGu -3' miRNA: 3'- uCGGAAGAUAAG-GG-------------CGCCgUUGCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home