miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12353 3' -54.7 NC_003324.1 + 26199 0.65 0.788975
Target:  5'- uCGAGauCAGGUaGCCgAAGGCccguucgGGCCGAUCc -3'
miRNA:   3'- -GCUC--GUCUAaCGG-UUCUG-------CCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 500 0.66 0.780094
Target:  5'- aGAGguGAUggcgaucaCCAAGGuCGGCagcuCGACCa -3'
miRNA:   3'- gCUCguCUAac------GGUUCU-GCCG----GCUGG- -5'
12353 3' -54.7 NC_003324.1 + 18989 0.66 0.780094
Target:  5'- cCGAGCGGGaaauacggcgGCUGcacGCGGCUGGCCu -3'
miRNA:   3'- -GCUCGUCUaa--------CGGUuc-UGCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 29581 0.66 0.780094
Target:  5'- aGAGCAGAagccggUUaCCGAGAUGcGcCCGACg -3'
miRNA:   3'- gCUCGUCU------AAcGGUUCUGC-C-GGCUGg -5'
12353 3' -54.7 NC_003324.1 + 18240 0.66 0.770081
Target:  5'- gCGGuCAGGUUGCCAucGACGacagaGCCGcgACCg -3'
miRNA:   3'- -GCUcGUCUAACGGUu-CUGC-----CGGC--UGG- -5'
12353 3' -54.7 NC_003324.1 + 24828 0.66 0.759926
Target:  5'- -aGGCGGAUcgcGCCGAcaaGGUCGGCCg -3'
miRNA:   3'- gcUCGUCUAa--CGGUUcugCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 54048 0.66 0.759926
Target:  5'- gCGcGCAGAggcuuucGCUGcggcGGAauCGGCCGACCg -3'
miRNA:   3'- -GCuCGUCUaa-----CGGU----UCU--GCCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 13532 0.66 0.749642
Target:  5'- gCGAGCAGcuuAUUGaacuCCGcGGCGGCgGugCa -3'
miRNA:   3'- -GCUCGUC---UAAC----GGUuCUGCCGgCugG- -5'
12353 3' -54.7 NC_003324.1 + 57134 0.66 0.749642
Target:  5'- ---uCAGAagGCCAAGACGGCUuGCg -3'
miRNA:   3'- gcucGUCUaaCGGUUCUGCCGGcUGg -5'
12353 3' -54.7 NC_003324.1 + 3154 0.66 0.739239
Target:  5'- aGAGCGGGagcGCCGu-GCGGCCauugagagaGACCg -3'
miRNA:   3'- gCUCGUCUaa-CGGUucUGCCGG---------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 31621 0.66 0.739239
Target:  5'- gCGGGCGcgcguGGcgGCCAuucucacgacgaGGACGGCgGACUg -3'
miRNA:   3'- -GCUCGU-----CUaaCGGU------------UCUGCCGgCUGG- -5'
12353 3' -54.7 NC_003324.1 + 1163 0.67 0.718121
Target:  5'- gCGAGCGGGaaGCCGcgaaagAGACGcugaaauCCGGCCg -3'
miRNA:   3'- -GCUCGUCUaaCGGU------UCUGCc------GGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 43133 0.67 0.718121
Target:  5'- --cGCAGGUUGCCGuccucGACGG-CGAgCu -3'
miRNA:   3'- gcuCGUCUAACGGUu----CUGCCgGCUgG- -5'
12353 3' -54.7 NC_003324.1 + 31180 0.67 0.707429
Target:  5'- cCGAGCAGcagcgcAUUGCCGcaaGGAcCGGCacggacaaucaGGCCg -3'
miRNA:   3'- -GCUCGUC------UAACGGU---UCU-GCCGg----------CUGG- -5'
12353 3' -54.7 NC_003324.1 + 26895 0.67 0.703132
Target:  5'- gGAGCGGcgccaaagccaGCCAAGcgcACGGCCGcgucuGCCa -3'
miRNA:   3'- gCUCGUCuaa--------CGGUUC---UGCCGGC-----UGG- -5'
12353 3' -54.7 NC_003324.1 + 43676 0.67 0.697744
Target:  5'- uCGAGCGcGAccGCCAAGuaucaggcccucaauCGGCUGACg -3'
miRNA:   3'- -GCUCGU-CUaaCGGUUCu--------------GCCGGCUGg -5'
12353 3' -54.7 NC_003324.1 + 55033 0.67 0.696665
Target:  5'- cCGGGCAGGcaagGC--GGACGGCUGggcuGCCg -3'
miRNA:   3'- -GCUCGUCUaa--CGguUCUGCCGGC----UGG- -5'
12353 3' -54.7 NC_003324.1 + 600 0.67 0.685838
Target:  5'- -cGGUAGAUgGUCGAG-CuGCCGACCu -3'
miRNA:   3'- gcUCGUCUAaCGGUUCuGcCGGCUGG- -5'
12353 3' -54.7 NC_003324.1 + 1766 0.67 0.685838
Target:  5'- gGAGauCAGcgUGCCAGGACGaaCCG-CCg -3'
miRNA:   3'- gCUC--GUCuaACGGUUCUGCc-GGCuGG- -5'
12353 3' -54.7 NC_003324.1 + 37466 0.67 0.685838
Target:  5'- gGAGCcgGGGUcuCCGGGAUGGgCGACUg -3'
miRNA:   3'- gCUCG--UCUAacGGUUCUGCCgGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.