miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12364 5' -62.3 NC_003324.1 + 56291 0.75 0.084297
Target:  5'- -gCCGCCGAUCGAGCGauaGGCgaGGCu -3'
miRNA:   3'- uaGGCGGCUAGCUCGCgc-UCGggCCG- -5'
12364 5' -62.3 NC_003324.1 + 54797 0.71 0.177574
Target:  5'- gAUgCGCCGAUCGAGCGUucGaCCGGa -3'
miRNA:   3'- -UAgGCGGCUAGCUCGCGcuCgGGCCg -5'
12364 5' -62.3 NC_003324.1 + 54743 0.7 0.205432
Target:  5'- cAUCUGCCcGUUGGGUGCuucgaggaaggauuGAGCCgGGCg -3'
miRNA:   3'- -UAGGCGGcUAGCUCGCG--------------CUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 54609 0.66 0.388561
Target:  5'- --aCGUCGAUCGAGCaagaucgaaagacuCGAggacgugcGCCCGGCu -3'
miRNA:   3'- uagGCGGCUAGCUCGc-------------GCU--------CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 54132 0.69 0.252695
Target:  5'- uUCCGCCGcagCGAaagccucuGCGCGccaaucGUCCGGCa -3'
miRNA:   3'- uAGGCGGCua-GCU--------CGCGCu-----CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 53654 0.67 0.336327
Target:  5'- -aCCGCCGugcggcaccuUgGAGCGcCGAGCUugauaCGGCg -3'
miRNA:   3'- uaGGCGGCu---------AgCUCGC-GCUCGG-----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 52667 0.72 0.159662
Target:  5'- gAUCCGCCGcau--GCGCGAGCguggauggucgauCCGGCg -3'
miRNA:   3'- -UAGGCGGCuagcuCGCGCUCG-------------GGCCG- -5'
12364 5' -62.3 NC_003324.1 + 52486 0.68 0.291484
Target:  5'- aGUUCGCCGAUCG-GCuCGAccucguagacuuuGCCgCGGCc -3'
miRNA:   3'- -UAGGCGGCUAGCuCGcGCU-------------CGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 49395 0.69 0.223236
Target:  5'- -cCCGggcaaauacUCGAUCGcGaucgGCGAGCCCGGCa -3'
miRNA:   3'- uaGGC---------GGCUAGCuCg---CGCUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 48434 0.66 0.385144
Target:  5'- ---aGCCGGcuUgGAGUGCGAGCaCGGUg -3'
miRNA:   3'- uaggCGGCU--AgCUCGCGCUCGgGCCG- -5'
12364 5' -62.3 NC_003324.1 + 48184 0.66 0.368361
Target:  5'- aGUCCGCU--UCGAGCaGC-AGCCacguCGGCg -3'
miRNA:   3'- -UAGGCGGcuAGCUCG-CGcUCGG----GCCG- -5'
12364 5' -62.3 NC_003324.1 + 45974 0.66 0.368361
Target:  5'- --gCGCCGaAUCGAGgaGCGuGCCCGa- -3'
miRNA:   3'- uagGCGGC-UAGCUCg-CGCuCGGGCcg -5'
12364 5' -62.3 NC_003324.1 + 44576 0.71 0.164301
Target:  5'- -gCCGuCCGAUCGGGaaaugaGGGUCCGGCg -3'
miRNA:   3'- uaGGC-GGCUAGCUCgcg---CUCGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 43718 0.66 0.39286
Target:  5'- -aCCGCCugcugccaaucggGAUCaGGGuCGCGAcugugaaagGCCCGGUa -3'
miRNA:   3'- uaGGCGG-------------CUAG-CUC-GCGCU---------CGGGCCG- -5'
12364 5' -62.3 NC_003324.1 + 43687 0.66 0.360159
Target:  5'- uGUCCGagCaGUCGAGCGCGAccGCCaaguaucaGGCc -3'
miRNA:   3'- -UAGGCg-GcUAGCUCGCGCU--CGGg-------CCG- -5'
12364 5' -62.3 NC_003324.1 + 41721 0.75 0.091462
Target:  5'- -gCCGCCGAcgaGAGCggGCGAGCCgUGGCa -3'
miRNA:   3'- uaGGCGGCUag-CUCG--CGCUCGG-GCCG- -5'
12364 5' -62.3 NC_003324.1 + 41033 0.73 0.122967
Target:  5'- -cUCGCUGuUCGAGUGUGAGCC-GGCg -3'
miRNA:   3'- uaGGCGGCuAGCUCGCGCUCGGgCCG- -5'
12364 5' -62.3 NC_003324.1 + 40516 0.66 0.376689
Target:  5'- -cCCGauggagccaCGAUCGAGCGCGgcgagaAGCCUcuGGUg -3'
miRNA:   3'- uaGGCg--------GCUAGCUCGCGC------UCGGG--CCG- -5'
12364 5' -62.3 NC_003324.1 + 40330 0.67 0.328643
Target:  5'- -aCCGCaCGcaaggcggcaGUCGAGCGgGAGCCa-GCa -3'
miRNA:   3'- uaGGCG-GC----------UAGCUCGCgCUCGGgcCG- -5'
12364 5' -62.3 NC_003324.1 + 40046 0.69 0.240544
Target:  5'- cGUCgGCCGuccacCGuaguuGCGCGGGUCUGGCc -3'
miRNA:   3'- -UAGgCGGCua---GCu----CGCGCUCGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.