Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 56291 | 0.75 | 0.084297 |
Target: 5'- -gCCGCCGAUCGAGCGauaGGCgaGGCu -3' miRNA: 3'- uaGGCGGCUAGCUCGCgc-UCGggCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 54797 | 0.71 | 0.177574 |
Target: 5'- gAUgCGCCGAUCGAGCGUucGaCCGGa -3' miRNA: 3'- -UAgGCGGCUAGCUCGCGcuCgGGCCg -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 54743 | 0.7 | 0.205432 |
Target: 5'- cAUCUGCCcGUUGGGUGCuucgaggaaggauuGAGCCgGGCg -3' miRNA: 3'- -UAGGCGGcUAGCUCGCG--------------CUCGGgCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 54609 | 0.66 | 0.388561 |
Target: 5'- --aCGUCGAUCGAGCaagaucgaaagacuCGAggacgugcGCCCGGCu -3' miRNA: 3'- uagGCGGCUAGCUCGc-------------GCU--------CGGGCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 54132 | 0.69 | 0.252695 |
Target: 5'- uUCCGCCGcagCGAaagccucuGCGCGccaaucGUCCGGCa -3' miRNA: 3'- uAGGCGGCua-GCU--------CGCGCu-----CGGGCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 53654 | 0.67 | 0.336327 |
Target: 5'- -aCCGCCGugcggcaccuUgGAGCGcCGAGCUugauaCGGCg -3' miRNA: 3'- uaGGCGGCu---------AgCUCGC-GCUCGG-----GCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 52667 | 0.72 | 0.159662 |
Target: 5'- gAUCCGCCGcau--GCGCGAGCguggauggucgauCCGGCg -3' miRNA: 3'- -UAGGCGGCuagcuCGCGCUCG-------------GGCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 52486 | 0.68 | 0.291484 |
Target: 5'- aGUUCGCCGAUCG-GCuCGAccucguagacuuuGCCgCGGCc -3' miRNA: 3'- -UAGGCGGCUAGCuCGcGCU-------------CGG-GCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 49395 | 0.69 | 0.223236 |
Target: 5'- -cCCGggcaaauacUCGAUCGcGaucgGCGAGCCCGGCa -3' miRNA: 3'- uaGGC---------GGCUAGCuCg---CGCUCGGGCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 48434 | 0.66 | 0.385144 |
Target: 5'- ---aGCCGGcuUgGAGUGCGAGCaCGGUg -3' miRNA: 3'- uaggCGGCU--AgCUCGCGCUCGgGCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 48184 | 0.66 | 0.368361 |
Target: 5'- aGUCCGCU--UCGAGCaGC-AGCCacguCGGCg -3' miRNA: 3'- -UAGGCGGcuAGCUCG-CGcUCGG----GCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 45974 | 0.66 | 0.368361 |
Target: 5'- --gCGCCGaAUCGAGgaGCGuGCCCGa- -3' miRNA: 3'- uagGCGGC-UAGCUCg-CGCuCGGGCcg -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 44576 | 0.71 | 0.164301 |
Target: 5'- -gCCGuCCGAUCGGGaaaugaGGGUCCGGCg -3' miRNA: 3'- uaGGC-GGCUAGCUCgcg---CUCGGGCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 43718 | 0.66 | 0.39286 |
Target: 5'- -aCCGCCugcugccaaucggGAUCaGGGuCGCGAcugugaaagGCCCGGUa -3' miRNA: 3'- uaGGCGG-------------CUAG-CUC-GCGCU---------CGGGCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 43687 | 0.66 | 0.360159 |
Target: 5'- uGUCCGagCaGUCGAGCGCGAccGCCaaguaucaGGCc -3' miRNA: 3'- -UAGGCg-GcUAGCUCGCGCU--CGGg-------CCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 41721 | 0.75 | 0.091462 |
Target: 5'- -gCCGCCGAcgaGAGCggGCGAGCCgUGGCa -3' miRNA: 3'- uaGGCGGCUag-CUCG--CGCUCGG-GCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 41033 | 0.73 | 0.122967 |
Target: 5'- -cUCGCUGuUCGAGUGUGAGCC-GGCg -3' miRNA: 3'- uaGGCGGCuAGCUCGCGCUCGGgCCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 40516 | 0.66 | 0.376689 |
Target: 5'- -cCCGauggagccaCGAUCGAGCGCGgcgagaAGCCUcuGGUg -3' miRNA: 3'- uaGGCg--------GCUAGCUCGCGC------UCGGG--CCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 40330 | 0.67 | 0.328643 |
Target: 5'- -aCCGCaCGcaaggcggcaGUCGAGCGgGAGCCa-GCa -3' miRNA: 3'- uaGGCG-GC----------UAGCUCGCgCUCGGgcCG- -5' |
|||||||
12364 | 5' | -62.3 | NC_003324.1 | + | 40046 | 0.69 | 0.240544 |
Target: 5'- cGUCgGCCGuccacCGuaguuGCGCGGGUCUGGCc -3' miRNA: 3'- -UAGgCGGCua---GCu----CGCGCUCGGGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home