miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12374 3' -53.6 NC_003324.1 + 26157 0.66 0.837127
Target:  5'- uGGUUAugAAGGCaauuGGCGC-GAAGcCGCg -3'
miRNA:   3'- gCCGGUugUUCUG----CUGCGuCUUC-GCG- -5'
12374 3' -53.6 NC_003324.1 + 42701 0.66 0.837127
Target:  5'- uGGCgaGGCAucaucccaucGGACGAUGCGguagacguuguuGAAGCGUg -3'
miRNA:   3'- gCCGg-UUGU----------UCUGCUGCGU------------CUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 3759 0.66 0.837127
Target:  5'- gCGGuCCAAUGgcAGAUGAUGC-GAAGCa- -3'
miRNA:   3'- -GCC-GGUUGU--UCUGCUGCGuCUUCGcg -5'
12374 3' -53.6 NC_003324.1 + 23995 0.66 0.837127
Target:  5'- aCGcGCUggUAGGGCGGCGgUAGGGcugcugcguGCGCu -3'
miRNA:   3'- -GC-CGGuuGUUCUGCUGC-GUCUU---------CGCG- -5'
12374 3' -53.6 NC_003324.1 + 13410 0.66 0.837127
Target:  5'- uCGGCCAGauacAGGCGACu--GAGGUGUc -3'
miRNA:   3'- -GCCGGUUgu--UCUGCUGcguCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 26528 0.66 0.837127
Target:  5'- -cGCCGACAuugccGuCGAUGaaGGAAGCGCg -3'
miRNA:   3'- gcCGGUUGUu----CuGCUGCg-UCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 27294 0.66 0.837127
Target:  5'- cCGGCUgcguGGgAAGuuGAgGCAGAgaaGGCGCu -3'
miRNA:   3'- -GCCGG----UUgUUCugCUgCGUCU---UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 48512 0.66 0.837127
Target:  5'- uCGGCgCGGCGcucuucGAUgaGGCGguGAAGCGUu -3'
miRNA:   3'- -GCCG-GUUGUu-----CUG--CUGCguCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 19283 0.66 0.837127
Target:  5'- aCGuGC--GCAAGGCGAUGgAGAucgcccAGCGCc -3'
miRNA:   3'- -GC-CGguUGUUCUGCUGCgUCU------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 31690 0.66 0.837127
Target:  5'- uCGGCCGcauccccguGCuGG-UGACGCgaaccaccAGGAGCGCc -3'
miRNA:   3'- -GCCGGU---------UGuUCuGCUGCG--------UCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 44804 0.66 0.837127
Target:  5'- uGGCgCGugGGGaACGGagaAGGAGCGCg -3'
miRNA:   3'- gCCG-GUugUUC-UGCUgcgUCUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 15614 0.66 0.830847
Target:  5'- aGGCUuuuCAAGAguucgcuguuuaaGGCGCAGAauggcgacggccccGGCGCg -3'
miRNA:   3'- gCCGGuu-GUUCUg------------CUGCGUCU--------------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 56802 0.66 0.828124
Target:  5'- gCGGCgCAACGAacUGaACGCuGcAAGCGCg -3'
miRNA:   3'- -GCCG-GUUGUUcuGC-UGCGuC-UUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 13860 0.66 0.828124
Target:  5'- uGGCUucguGCGGGAgGGCGUAau-GCGCc -3'
miRNA:   3'- gCCGGu---UGUUCUgCUGCGUcuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 21144 0.66 0.828124
Target:  5'- uCGGCCucguCAGuGAgCGA-GCGGgcGCGCg -3'
miRNA:   3'- -GCCGGuu--GUU-CU-GCUgCGUCuuCGCG- -5'
12374 3' -53.6 NC_003324.1 + 17089 0.66 0.824463
Target:  5'- gGGCCAagaacGCAgcgaaacgugaGGAUGGCGUccugauccagaauGAAGCGCu -3'
miRNA:   3'- gCCGGU-----UGU-----------UCUGCUGCGu------------CUUCGCG- -5'
12374 3' -53.6 NC_003324.1 + 30558 0.66 0.82262
Target:  5'- gGGCCuGCucGGCGGCGCcgauucGAcccgcaacguucgggAGCGCa -3'
miRNA:   3'- gCCGGuUGuuCUGCUGCGu-----CU---------------UCGCG- -5'
12374 3' -53.6 NC_003324.1 + 51713 0.66 0.818911
Target:  5'- aGGauauCAGCGAGGcCGACGCAaucgccGAGgGCGCc -3'
miRNA:   3'- gCCg---GUUGUUCU-GCUGCGU------CUU-CGCG- -5'
12374 3' -53.6 NC_003324.1 + 41704 0.66 0.818911
Target:  5'- gCGaGCCGugGCAaugguGGGCGuggcucuCGCAGAGGgGCu -3'
miRNA:   3'- -GC-CGGU--UGU-----UCUGCu------GCGUCUUCgCG- -5'
12374 3' -53.6 NC_003324.1 + 18518 0.66 0.817979
Target:  5'- cCGG-CGGCAAGGuCG-CGCAGAccagaccAGCGUc -3'
miRNA:   3'- -GCCgGUUGUUCU-GCuGCGUCU-------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.