Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12374 | 3' | -53.6 | NC_003324.1 | + | 44804 | 0.66 | 0.837127 |
Target: 5'- uGGCgCGugGGGaACGGagaAGGAGCGCg -3' miRNA: 3'- gCCG-GUugUUC-UGCUgcgUCUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 19283 | 0.66 | 0.837127 |
Target: 5'- aCGuGC--GCAAGGCGAUGgAGAucgcccAGCGCc -3' miRNA: 3'- -GC-CGguUGUUCUGCUGCgUCU------UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 48512 | 0.66 | 0.837127 |
Target: 5'- uCGGCgCGGCGcucuucGAUgaGGCGguGAAGCGUu -3' miRNA: 3'- -GCCG-GUUGUu-----CUG--CUGCguCUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 27294 | 0.66 | 0.837127 |
Target: 5'- cCGGCUgcguGGgAAGuuGAgGCAGAgaaGGCGCu -3' miRNA: 3'- -GCCGG----UUgUUCugCUgCGUCU---UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 26528 | 0.66 | 0.837127 |
Target: 5'- -cGCCGACAuugccGuCGAUGaaGGAAGCGCg -3' miRNA: 3'- gcCGGUUGUu----CuGCUGCg-UCUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 13410 | 0.66 | 0.837127 |
Target: 5'- uCGGCCAGauacAGGCGACu--GAGGUGUc -3' miRNA: 3'- -GCCGGUUgu--UCUGCUGcguCUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 23995 | 0.66 | 0.837127 |
Target: 5'- aCGcGCUggUAGGGCGGCGgUAGGGcugcugcguGCGCu -3' miRNA: 3'- -GC-CGGuuGUUCUGCUGC-GUCUU---------CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 3759 | 0.66 | 0.837127 |
Target: 5'- gCGGuCCAAUGgcAGAUGAUGC-GAAGCa- -3' miRNA: 3'- -GCC-GGUUGU--UCUGCUGCGuCUUCGcg -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 42701 | 0.66 | 0.837127 |
Target: 5'- uGGCgaGGCAucaucccaucGGACGAUGCGguagacguuguuGAAGCGUg -3' miRNA: 3'- gCCGg-UUGU----------UCUGCUGCGU------------CUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 26157 | 0.66 | 0.837127 |
Target: 5'- uGGUUAugAAGGCaauuGGCGC-GAAGcCGCg -3' miRNA: 3'- gCCGGUugUUCUG----CUGCGuCUUC-GCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 31690 | 0.66 | 0.837127 |
Target: 5'- uCGGCCGcauccccguGCuGG-UGACGCgaaccaccAGGAGCGCc -3' miRNA: 3'- -GCCGGU---------UGuUCuGCUGCG--------UCUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 15614 | 0.66 | 0.830847 |
Target: 5'- aGGCUuuuCAAGAguucgcuguuuaaGGCGCAGAauggcgacggccccGGCGCg -3' miRNA: 3'- gCCGGuu-GUUCUg------------CUGCGUCU--------------UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 13860 | 0.66 | 0.828124 |
Target: 5'- uGGCUucguGCGGGAgGGCGUAau-GCGCc -3' miRNA: 3'- gCCGGu---UGUUCUgCUGCGUcuuCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 21144 | 0.66 | 0.828124 |
Target: 5'- uCGGCCucguCAGuGAgCGA-GCGGgcGCGCg -3' miRNA: 3'- -GCCGGuu--GUU-CU-GCUgCGUCuuCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 56802 | 0.66 | 0.828124 |
Target: 5'- gCGGCgCAACGAacUGaACGCuGcAAGCGCg -3' miRNA: 3'- -GCCG-GUUGUUcuGC-UGCGuC-UUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 17089 | 0.66 | 0.824463 |
Target: 5'- gGGCCAagaacGCAgcgaaacgugaGGAUGGCGUccugauccagaauGAAGCGCu -3' miRNA: 3'- gCCGGU-----UGU-----------UCUGCUGCGu------------CUUCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 30558 | 0.66 | 0.82262 |
Target: 5'- gGGCCuGCucGGCGGCGCcgauucGAcccgcaacguucgggAGCGCa -3' miRNA: 3'- gCCGGuUGuuCUGCUGCGu-----CU---------------UCGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 51713 | 0.66 | 0.818911 |
Target: 5'- aGGauauCAGCGAGGcCGACGCAaucgccGAGgGCGCc -3' miRNA: 3'- gCCg---GUUGUUCU-GCUGCGU------CUU-CGCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 41704 | 0.66 | 0.818911 |
Target: 5'- gCGaGCCGugGCAaugguGGGCGuggcucuCGCAGAGGgGCu -3' miRNA: 3'- -GC-CGGU--UGU-----UCUGCu------GCGUCUUCgCG- -5' |
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12374 | 3' | -53.6 | NC_003324.1 | + | 18518 | 0.66 | 0.817979 |
Target: 5'- cCGG-CGGCAAGGuCG-CGCAGAccagaccAGCGUc -3' miRNA: 3'- -GCCgGUUGUUCU-GCuGCGUCU-------UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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