miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 5' -56.1 NC_003324.1 + 43220 0.66 0.634498
Target:  5'- cACUGCAGCGAaggaacacgauguaGGgGGCCGCcuGCAGg -3'
miRNA:   3'- uUGGCGUCGUUg-------------UCgUUGGCGu-CGUC- -5'
12377 5' -56.1 NC_003324.1 + 44099 0.66 0.630015
Target:  5'- -cUCGCAGCGcuCGGCAugaucCCGgCGGCAGc -3'
miRNA:   3'- uuGGCGUCGUu-GUCGUu----GGC-GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 55302 0.66 0.630015
Target:  5'- uGCCGCGGCugcuggAACaAGCuGCCaCAGCGGc -3'
miRNA:   3'- uUGGCGUCG------UUG-UCGuUGGcGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 21596 0.66 0.630015
Target:  5'- cGCCGUGGCGGCcguccgaccuugAGCAACgcgacgggCGCGGCAu -3'
miRNA:   3'- uUGGCGUCGUUG------------UCGUUG--------GCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 24577 0.66 0.618809
Target:  5'- cACCGCuGCG--GGCGACCaGC-GCAGg -3'
miRNA:   3'- uUGGCGuCGUugUCGUUGG-CGuCGUC- -5'
12377 5' -56.1 NC_003324.1 + 2359 0.66 0.618809
Target:  5'- -cCCGCAGgGGCGggucGCggUCGCuGCGGg -3'
miRNA:   3'- uuGGCGUCgUUGU----CGuuGGCGuCGUC- -5'
12377 5' -56.1 NC_003324.1 + 48473 0.66 0.615449
Target:  5'- aGGCCGCAGCcgAGCagguaggcgccaagGGCAACUGCgAGCc- -3'
miRNA:   3'- -UUGGCGUCG--UUG--------------UCGUUGGCG-UCGuc -5'
12377 5' -56.1 NC_003324.1 + 24092 0.66 0.607615
Target:  5'- cAAgCGCAcGCAGCAGCccuACCGCcGCc- -3'
miRNA:   3'- -UUgGCGU-CGUUGUCGu--UGGCGuCGuc -5'
12377 5' -56.1 NC_003324.1 + 30115 0.66 0.607615
Target:  5'- gGGCgGCGGCAugGGUggUguugguggCGCAGCAu -3'
miRNA:   3'- -UUGgCGUCGUugUCGuuG--------GCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 36269 0.66 0.607615
Target:  5'- -gUCGC-GCAACAuCAguauGCUGCAGCAGg -3'
miRNA:   3'- uuGGCGuCGUUGUcGU----UGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 48942 0.66 0.596443
Target:  5'- aGGCCGUcGCuucuuCGGCAGUCGCGGCAu -3'
miRNA:   3'- -UUGGCGuCGuu---GUCGUUGGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 9646 0.66 0.596443
Target:  5'- cACCGcCGGCAACGcCAACgCGCugGGCGGc -3'
miRNA:   3'- uUGGC-GUCGUUGUcGUUG-GCG--UCGUC- -5'
12377 5' -56.1 NC_003324.1 + 56673 0.66 0.596443
Target:  5'- uGCCGCcgucaauucgucAGCGAUAGCGGCguuauggGCGGCGGc -3'
miRNA:   3'- uUGGCG------------UCGUUGUCGUUGg------CGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 14462 0.66 0.596443
Target:  5'- cGGuuGCGGCGcguugauugGCAGCAGCCGUGGa-- -3'
miRNA:   3'- -UUggCGUCGU---------UGUCGUUGGCGUCguc -5'
12377 5' -56.1 NC_003324.1 + 44926 0.66 0.589754
Target:  5'- aGGCUGCccacGGCAGCAGCGggcacgccaaugacGCCGCccccuucuccccgcAGCAGc -3'
miRNA:   3'- -UUGGCG----UCGUUGUCGU--------------UGGCG--------------UCGUC- -5'
12377 5' -56.1 NC_003324.1 + 34437 0.66 0.585302
Target:  5'- cGGCCGaCGGCAcauUGGCAAgCGuCGGCGGg -3'
miRNA:   3'- -UUGGC-GUCGUu--GUCGUUgGC-GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 11604 0.66 0.585302
Target:  5'- aGACUGguGCGACGGCAGCgaugaacgugCGCuugaacgacGGCGGu -3'
miRNA:   3'- -UUGGCguCGUUGUCGUUG----------GCG---------UCGUC- -5'
12377 5' -56.1 NC_003324.1 + 14759 0.66 0.585302
Target:  5'- gGGCUGCAGCucGACGGCuggaaAGCU-CAGCAGg -3'
miRNA:   3'- -UUGGCGUCG--UUGUCG-----UUGGcGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 13468 0.66 0.581968
Target:  5'- gAGCUGCAGCAAUuccuGCAgauccucgauccguACgGCAGCGc -3'
miRNA:   3'- -UUGGCGUCGUUGu---CGU--------------UGgCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 49423 0.67 0.574202
Target:  5'- gAGCC-CGGCAGCGGCGcuugGCUGaucuGGCAGa -3'
miRNA:   3'- -UUGGcGUCGUUGUCGU----UGGCg---UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.