miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12380 5' -60.1 NC_003324.1 + 14575 0.66 0.50793
Target:  5'- uCGCGGCcuGCCGGCGCaaGCg--GCCGGc -3'
miRNA:   3'- cGUGCCG--CGGCUGCG--CGaagCGGUCu -5'
12380 5' -60.1 NC_003324.1 + 43018 0.66 0.50793
Target:  5'- gGCAUGGgacgagacCGCCGGCGCaGUgacCGCCAa- -3'
miRNA:   3'- -CGUGCC--------GCGGCUGCG-CGaa-GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 50347 0.66 0.504922
Target:  5'- -gGCGGCGCaucauucucuuucuCGACGCGggcUUUCGCCucGAu -3'
miRNA:   3'- cgUGCCGCG--------------GCUGCGC---GAAGCGGu-CU- -5'
12380 5' -60.1 NC_003324.1 + 53482 0.66 0.497932
Target:  5'- aGUA-GGCGCCGugacCGCGa--UGCCAGAu -3'
miRNA:   3'- -CGUgCCGCGGCu---GCGCgaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 13323 0.66 0.497932
Target:  5'- aGCuugaGGUGCuCGACGgcaGCcgCGCCGGAc -3'
miRNA:   3'- -CGug--CCGCG-GCUGCg--CGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 39852 0.66 0.488023
Target:  5'- uGCACcGUGCCGAgaucaucgagcaCGUGC--CGCCGGAc -3'
miRNA:   3'- -CGUGcCGCGGCU------------GCGCGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 30119 0.66 0.478208
Target:  5'- uGCGaaGgGUCGACGCGCUggauagcugcgUUGUCGGAa -3'
miRNA:   3'- -CGUgcCgCGGCUGCGCGA-----------AGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 41815 0.66 0.478208
Target:  5'- -gGgGGUGCCGugGCGUgaUCGCaUGGAg -3'
miRNA:   3'- cgUgCCGCGGCugCGCGa-AGCG-GUCU- -5'
12380 5' -60.1 NC_003324.1 + 8100 0.66 0.472366
Target:  5'- cCACGGuCGCCGuuGCGCcUgugcugaaacucaccCGCCGGGc -3'
miRNA:   3'- cGUGCC-GCGGCugCGCGaA---------------GCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 54203 0.66 0.472366
Target:  5'- uGCGCaGGCGCCaacuuuucgagguugGugAUGCGCUUCGUCAc- -3'
miRNA:   3'- -CGUG-CCGCGG---------------C--UGCGCGAAGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 18278 0.66 0.468491
Target:  5'- -gACGGaaucgGCCGACGCGCgggcaaUCGCUg-- -3'
miRNA:   3'- cgUGCCg----CGGCUGCGCGa-----AGCGGucu -5'
12380 5' -60.1 NC_003324.1 + 18893 0.66 0.468491
Target:  5'- --cUGGCGCCGACcuuCGCcgCGCCAu- -3'
miRNA:   3'- cguGCCGCGGCUGc--GCGaaGCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 30114 0.66 0.467525
Target:  5'- -gGCGGCGgCaugggugguguugGugGCGCagcaucgcgUCGCCAGAg -3'
miRNA:   3'- cgUGCCGCgG-------------CugCGCGa--------AGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 30669 0.66 0.458877
Target:  5'- -aGCuGCGCgGAuCGCGCcaCGCCGGGc -3'
miRNA:   3'- cgUGcCGCGgCU-GCGCGaaGCGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 29561 0.66 0.458877
Target:  5'- -aGauGCGcCCGACGCGCccgcaGCCAGGc -3'
miRNA:   3'- cgUgcCGC-GGCUGCGCGaag--CGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 5495 0.66 0.458877
Target:  5'- --uCGGCGCCGcAgGUGCgggCGCCAu- -3'
miRNA:   3'- cguGCCGCGGC-UgCGCGaa-GCGGUcu -5'
12380 5' -60.1 NC_003324.1 + 7727 0.66 0.458877
Target:  5'- aGC-CGGCacuGCCGGCGCGaCUcCGCgaAGAu -3'
miRNA:   3'- -CGuGCCG---CGGCUGCGC-GAaGCGg-UCU- -5'
12380 5' -60.1 NC_003324.1 + 26147 0.66 0.458877
Target:  5'- gGCAauUGGCGCgaaGcCGCGCUUgaGCUAGAg -3'
miRNA:   3'- -CGU--GCCGCGg--CuGCGCGAAg-CGGUCU- -5'
12380 5' -60.1 NC_003324.1 + 14356 0.66 0.457921
Target:  5'- aGCGCGG-GCCGACGUauccacgGCUgcuGCCAa- -3'
miRNA:   3'- -CGUGCCgCGGCUGCG-------CGAag-CGGUcu -5'
12380 5' -60.1 NC_003324.1 + 15650 0.66 0.457921
Target:  5'- gGCgACGGCcCCGGCGCGCUcgaugacgcgaUCaaggcggGCCAGc -3'
miRNA:   3'- -CG-UGCCGcGGCUGCGCGA-----------AG-------CGGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.