Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12397 | 3' | -50.6 | NC_003324.1 | + | 45843 | 0.66 | 0.945284 |
Target: 5'- aCAGUGAGGUGGAaaCGgCGCgg--GGCg -3' miRNA: 3'- cGUCGCUUUAUCU--GCgGCGaaagCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 48703 | 0.66 | 0.945284 |
Target: 5'- aGCAGguccagaaauaCGAAAaGGGCGCCaaccGCg-UCGGCg -3' miRNA: 3'- -CGUC-----------GCUUUaUCUGCGG----CGaaAGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 48553 | 0.66 | 0.945284 |
Target: 5'- cGCAGCGcuc--GAUGuCUGCUUUgaUGGCg -3' miRNA: 3'- -CGUCGCuuuauCUGC-GGCGAAA--GCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 6675 | 0.66 | 0.945284 |
Target: 5'- aCGGCacauaGGACGCUGUgugccagUUCGGCu -3' miRNA: 3'- cGUCGcuuuaUCUGCGGCGa------AAGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 21311 | 0.66 | 0.944794 |
Target: 5'- ----aGAGAUGGAaacgcgcCGUCGCcUUCGGCa -3' miRNA: 3'- cgucgCUUUAUCU-------GCGGCGaAAGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 11617 | 0.66 | 0.940253 |
Target: 5'- gGCAGCGAu---GaACGUgCGCUUgaacgaCGGCg -3' miRNA: 3'- -CGUCGCUuuauC-UGCG-GCGAAa-----GCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 22261 | 0.66 | 0.940253 |
Target: 5'- cGCGGCGAGcugcgccuuGAUGUCGUcgUUGGUg -3' miRNA: 3'- -CGUCGCUUuau------CUGCGGCGaaAGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 25591 | 0.66 | 0.940253 |
Target: 5'- gGCGGUGAugacAUAGucugucggcCGCUGCUgcgcCGGCa -3' miRNA: 3'- -CGUCGCUu---UAUCu--------GCGGCGAaa--GCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 30633 | 0.66 | 0.940253 |
Target: 5'- cGCcGCuGGAGUAGagcagcGCGUCGCag-CGGCa -3' miRNA: 3'- -CGuCG-CUUUAUC------UGCGGCGaaaGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 5177 | 0.66 | 0.940253 |
Target: 5'- aGCGGCGcAGAUcGucgaucGCGCCGCUUaagcuaUCaGGCc -3' miRNA: 3'- -CGUCGC-UUUAuC------UGCGGCGAA------AG-CCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 20739 | 0.66 | 0.939735 |
Target: 5'- -gAGCGc---AGGCGCCuGCUUcucgaugUCGGCc -3' miRNA: 3'- cgUCGCuuuaUCUGCGG-CGAA-------AGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 33842 | 0.66 | 0.934934 |
Target: 5'- cGCGGUGAcugggAGACG-UGCUgugaCGGCg -3' miRNA: 3'- -CGUCGCUuua--UCUGCgGCGAaa--GCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 30126 | 0.66 | 0.934934 |
Target: 5'- gGCGGCGuGAUGGGCGgCgGCaugggUGGUg -3' miRNA: 3'- -CGUCGCuUUAUCUGC-GgCGaaa--GCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 30597 | 0.66 | 0.934934 |
Target: 5'- cGCgAGCGA---GGAUGCCGCc--CGGa -3' miRNA: 3'- -CG-UCGCUuuaUCUGCGGCGaaaGCCg -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 48166 | 0.66 | 0.934934 |
Target: 5'- uGCAGCGAc---GugGUCcCUaUCGGCc -3' miRNA: 3'- -CGUCGCUuuauCugCGGcGAaAGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 24825 | 0.66 | 0.934934 |
Target: 5'- gGCAgGCGGAuc--GCGCCGacaaggUCGGCc -3' miRNA: 3'- -CGU-CGCUUuaucUGCGGCgaa---AGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 31101 | 0.66 | 0.934934 |
Target: 5'- uGCGGC--AAU--GCGCUGCUgcUCGGCu -3' miRNA: 3'- -CGUCGcuUUAucUGCGGCGAa-AGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 27065 | 0.66 | 0.933835 |
Target: 5'- cGCGGCGuuaccguuGugGCCGgug-CGGCu -3' miRNA: 3'- -CGUCGCuuuau---CugCGGCgaaaGCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 54001 | 0.66 | 0.929898 |
Target: 5'- gGCGGCGAAGcgcacuUGCCGCgcugaugaucuugCGGCg -3' miRNA: 3'- -CGUCGCUUUaucu--GCGGCGaaa----------GCCG- -5' |
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12397 | 3' | -50.6 | NC_003324.1 | + | 51421 | 0.66 | 0.929898 |
Target: 5'- cGCGGCGAccggauuugggugcGcgAGaACGCUGCUguccgucaccagagUUGGCa -3' miRNA: 3'- -CGUCGCU--------------UuaUC-UGCGGCGAa-------------AGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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