miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12397 3' -50.6 NC_003324.1 + 45843 0.66 0.945284
Target:  5'- aCAGUGAGGUGGAaaCGgCGCgg--GGCg -3'
miRNA:   3'- cGUCGCUUUAUCU--GCgGCGaaagCCG- -5'
12397 3' -50.6 NC_003324.1 + 48703 0.66 0.945284
Target:  5'- aGCAGguccagaaauaCGAAAaGGGCGCCaaccGCg-UCGGCg -3'
miRNA:   3'- -CGUC-----------GCUUUaUCUGCGG----CGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48553 0.66 0.945284
Target:  5'- cGCAGCGcuc--GAUGuCUGCUUUgaUGGCg -3'
miRNA:   3'- -CGUCGCuuuauCUGC-GGCGAAA--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 6675 0.66 0.945284
Target:  5'- aCGGCacauaGGACGCUGUgugccagUUCGGCu -3'
miRNA:   3'- cGUCGcuuuaUCUGCGGCGa------AAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 21311 0.66 0.944794
Target:  5'- ----aGAGAUGGAaacgcgcCGUCGCcUUCGGCa -3'
miRNA:   3'- cgucgCUUUAUCU-------GCGGCGaAAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 22261 0.66 0.940253
Target:  5'- cGCGGCGAGcugcgccuuGAUGUCGUcgUUGGUg -3'
miRNA:   3'- -CGUCGCUUuau------CUGCGGCGaaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 25591 0.66 0.940253
Target:  5'- gGCGGUGAugacAUAGucugucggcCGCUGCUgcgcCGGCa -3'
miRNA:   3'- -CGUCGCUu---UAUCu--------GCGGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 11617 0.66 0.940253
Target:  5'- gGCAGCGAu---GaACGUgCGCUUgaacgaCGGCg -3'
miRNA:   3'- -CGUCGCUuuauC-UGCG-GCGAAa-----GCCG- -5'
12397 3' -50.6 NC_003324.1 + 5177 0.66 0.940253
Target:  5'- aGCGGCGcAGAUcGucgaucGCGCCGCUUaagcuaUCaGGCc -3'
miRNA:   3'- -CGUCGC-UUUAuC------UGCGGCGAA------AG-CCG- -5'
12397 3' -50.6 NC_003324.1 + 30633 0.66 0.940253
Target:  5'- cGCcGCuGGAGUAGagcagcGCGUCGCag-CGGCa -3'
miRNA:   3'- -CGuCG-CUUUAUC------UGCGGCGaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 20739 0.66 0.939735
Target:  5'- -gAGCGc---AGGCGCCuGCUUcucgaugUCGGCc -3'
miRNA:   3'- cgUCGCuuuaUCUGCGG-CGAA-------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 33842 0.66 0.934934
Target:  5'- cGCGGUGAcugggAGACG-UGCUgugaCGGCg -3'
miRNA:   3'- -CGUCGCUuua--UCUGCgGCGAaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 31101 0.66 0.934934
Target:  5'- uGCGGC--AAU--GCGCUGCUgcUCGGCu -3'
miRNA:   3'- -CGUCGcuUUAucUGCGGCGAa-AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 24825 0.66 0.934934
Target:  5'- gGCAgGCGGAuc--GCGCCGacaaggUCGGCc -3'
miRNA:   3'- -CGU-CGCUUuaucUGCGGCgaa---AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 48166 0.66 0.934934
Target:  5'- uGCAGCGAc---GugGUCcCUaUCGGCc -3'
miRNA:   3'- -CGUCGCUuuauCugCGGcGAaAGCCG- -5'
12397 3' -50.6 NC_003324.1 + 30597 0.66 0.934934
Target:  5'- cGCgAGCGA---GGAUGCCGCc--CGGa -3'
miRNA:   3'- -CG-UCGCUuuaUCUGCGGCGaaaGCCg -5'
12397 3' -50.6 NC_003324.1 + 30126 0.66 0.934934
Target:  5'- gGCGGCGuGAUGGGCGgCgGCaugggUGGUg -3'
miRNA:   3'- -CGUCGCuUUAUCUGC-GgCGaaa--GCCG- -5'
12397 3' -50.6 NC_003324.1 + 27065 0.66 0.933835
Target:  5'- cGCGGCGuuaccguuGugGCCGgug-CGGCu -3'
miRNA:   3'- -CGUCGCuuuau---CugCGGCgaaaGCCG- -5'
12397 3' -50.6 NC_003324.1 + 51421 0.66 0.929898
Target:  5'- cGCGGCGAccggauuugggugcGcgAGaACGCUGCUguccgucaccagagUUGGCa -3'
miRNA:   3'- -CGUCGCU--------------UuaUC-UGCGGCGAa-------------AGCCG- -5'
12397 3' -50.6 NC_003324.1 + 54001 0.66 0.929898
Target:  5'- gGCGGCGAAGcgcacuUGCCGCgcugaugaucuugCGGCg -3'
miRNA:   3'- -CGUCGCUUUaucu--GCGGCGaaa----------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.