Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 8121 | 0.68 | 0.35085 |
|
Target: 5'- uGCUgaaacucacccGCCGGGCagcugcgCGCuCGAcUGCGAUCa -3' miRNA: 3'- gCGA-----------CGGCCCGa------GCG-GCUaGCGCUAG- -5' |
|||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 49106 | 0.67 | 0.358965 |
|
Target: 5'- uCGCUGCCGGuGacgcgaUCGCCaaGAUgGCGGg- -3' miRNA: 3'- -GCGACGGCC-Cg-----AGCGG--CUAgCGCUag -5' |
|||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 14539 | 0.67 | 0.36721 |
|
Target: 5'- gGC-GCUGGcGCUCaagGCCGA-CGUGGUCa -3' miRNA: 3'- gCGaCGGCC-CGAG---CGGCUaGCGCUAG- -5' |
|||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 26877 | 0.67 | 0.384086 |
|
Target: 5'- gGCUcaagggugacGCCGGGCUC-CauGUCGCGAUg -3' miRNA: 3'- gCGA----------CGGCCCGAGcGgcUAGCGCUAg -5' |
|||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 55321 | 0.67 | 0.400588 |
|
Target: 5'- aGCUGCCacagcGGCucaaggaUCGCUGGaaCGCGAUCa -3' miRNA: 3'- gCGACGGc----CCG-------AGCGGCUa-GCGCUAG- -5' |
|||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 22459 | 0.66 | 0.410346 |
|
Target: 5'- aCGCaGCaUGGGCUCGUCGAgguagCGCa--- -3' miRNA: 3'- -GCGaCG-GCCCGAGCGGCUa----GCGcuag -5' |
|||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 43794 | 0.66 | 0.419344 |
|
Target: 5'- gGgUGCCGGGaaCGCCGGcaaggCGCGugaaAUCa -3' miRNA: 3'- gCgACGGCCCgaGCGGCUa----GCGC----UAG- -5' |
|||||||
| 12398 | 3' | -61 | NC_003324.1 | + | 29261 | 0.72 | 0.175909 |
|
Target: 5'- uGCaucGCCGGGCUCGCgcuCGAUCgGCGGa- -3' miRNA: 3'- gCGa--CGGCCCGAGCG---GCUAG-CGCUag -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home