miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12408 3' -58.6 NC_003324.1 + 43122 0.66 0.592723
Target:  5'- -uGCCAaagUCCCGCAGguugccguccuCGACgGCGAgCu -3'
miRNA:   3'- guUGGUg--AGGGCGUC-----------GCUGgCGCUgG- -5'
12408 3' -58.6 NC_003324.1 + 43007 0.66 0.592723
Target:  5'- aGACCGCcggCGCAGUGACCGCcaauggucGCCc -3'
miRNA:   3'- gUUGGUGaggGCGUCGCUGGCGc-------UGG- -5'
12408 3' -58.6 NC_003324.1 + 31223 0.66 0.592723
Target:  5'- uGACgAUgccCCCGcCAGCGccagcGCCGcCGGCCg -3'
miRNA:   3'- gUUGgUGa--GGGC-GUCGC-----UGGC-GCUGG- -5'
12408 3' -58.6 NC_003324.1 + 38422 0.66 0.58214
Target:  5'- -cGCCGC-CCCGguGCccUCGUGAUCg -3'
miRNA:   3'- guUGGUGaGGGCguCGcuGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 35110 0.66 0.58214
Target:  5'- aGGCCGCUgCUGCcGCcGCCGCuGCUg -3'
miRNA:   3'- gUUGGUGAgGGCGuCGcUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 9622 0.66 0.58214
Target:  5'- --cCCACUCCgGCuGaccacccaGACC-CGACCa -3'
miRNA:   3'- guuGGUGAGGgCGuCg-------CUGGcGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16941 0.66 0.58214
Target:  5'- aGAUCGgUUCCGcCAGCaGAUCGCGugUu -3'
miRNA:   3'- gUUGGUgAGGGC-GUCG-CUGGCGCugG- -5'
12408 3' -58.6 NC_003324.1 + 13073 0.66 0.571596
Target:  5'- gCAGCCGgUaccgCCGCcGcCGACCGCcGCCg -3'
miRNA:   3'- -GUUGGUgAg---GGCGuC-GCUGGCGcUGG- -5'
12408 3' -58.6 NC_003324.1 + 2497 0.66 0.571596
Target:  5'- ---gCACUCCgaGCGGCGacagauaguaaGCCGUGACg -3'
miRNA:   3'- guugGUGAGGg-CGUCGC-----------UGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 6166 0.66 0.565291
Target:  5'- aAugCGCUgCCCgacgacaugcgagagGCAGCccuuGCUGCGACCg -3'
miRNA:   3'- gUugGUGA-GGG---------------CGUCGc---UGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 3414 0.66 0.561098
Target:  5'- gAGCCACUgCaGuCGGCGACCGUcuucgGGCUg -3'
miRNA:   3'- gUUGGUGAgGgC-GUCGCUGGCG-----CUGG- -5'
12408 3' -58.6 NC_003324.1 + 22346 0.66 0.550654
Target:  5'- aCGACgACaUCaaggCGCAGCucGCCGCGAUCg -3'
miRNA:   3'- -GUUGgUG-AGg---GCGUCGc-UGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 33852 0.66 0.550654
Target:  5'- -cACCAUUUgCCGCGGUGACUGgGAg- -3'
miRNA:   3'- guUGGUGAG-GGCGUCGCUGGCgCUgg -5'
12408 3' -58.6 NC_003324.1 + 42212 0.66 0.550654
Target:  5'- -uGCUGaucCCCGCGGCGGCauugGCGACg -3'
miRNA:   3'- guUGGUga-GGGCGUCGCUGg---CGCUGg -5'
12408 3' -58.6 NC_003324.1 + 25694 0.66 0.540271
Target:  5'- gCAGCCGugCCggcgcaGCAGCGGCCGacaGACUa -3'
miRNA:   3'- -GUUGGUgaGGg-----CGUCGCUGGCg--CUGG- -5'
12408 3' -58.6 NC_003324.1 + 49494 0.66 0.540271
Target:  5'- -cGCCGCUgCCGgGcucGcCGAUCGCGAUCg -3'
miRNA:   3'- guUGGUGAgGGCgU---C-GCUGGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 16252 0.66 0.540271
Target:  5'- gAGCUGCggugCCCGCcucggugccAGCGAUgccuggCGCGGCCc -3'
miRNA:   3'- gUUGGUGa---GGGCG---------UCGCUG------GCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 55394 0.66 0.540271
Target:  5'- gAGCCGCUgUgGCAGCuuguuccagcaGCCGCGGCa -3'
miRNA:   3'- gUUGGUGAgGgCGUCGc----------UGGCGCUGg -5'
12408 3' -58.6 NC_003324.1 + 44290 0.66 0.540271
Target:  5'- uCGAUCugUCUcgacgaaccgggCGCGGUGG-CGCGGCCg -3'
miRNA:   3'- -GUUGGugAGG------------GCGUCGCUgGCGCUGG- -5'
12408 3' -58.6 NC_003324.1 + 54506 0.67 0.529954
Target:  5'- gCAuCCGCgaagCCUGCAgcGCGACCgGCGuuCCg -3'
miRNA:   3'- -GUuGGUGa---GGGCGU--CGCUGG-CGCu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.