miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12414 5' -52.3 NC_003324.1 + 3728 0.66 0.902302
Target:  5'- gCGAUCGAaGCUgguggcuuugugauuGCCGGCGguccaauggcAGAUGAuGCg -3'
miRNA:   3'- -GCUAGCUgCGG---------------UGGCUGU----------UCUACU-CG- -5'
12414 5' -52.3 NC_003324.1 + 36170 0.66 0.899543
Target:  5'- -cGUC-ACGCCGCCGACcuGcUGcAGCa -3'
miRNA:   3'- gcUAGcUGCGGUGGCUGuuCuAC-UCG- -5'
12414 5' -52.3 NC_003324.1 + 27754 0.66 0.899543
Target:  5'- aGAagcUCGGCGCCACgcAUGAGGUGGucGCg -3'
miRNA:   3'- gCU---AGCUGCGGUGgcUGUUCUACU--CG- -5'
12414 5' -52.3 NC_003324.1 + 39876 0.66 0.899543
Target:  5'- aGAUCGuCGUCAUCGaggGCGAGGUGcaccguGCc -3'
miRNA:   3'- gCUAGCuGCGGUGGC---UGUUCUACu-----CG- -5'
12414 5' -52.3 NC_003324.1 + 26537 0.66 0.897444
Target:  5'- -aAUUGAUGUCGCCGACAuugccgucgaugaaGGAagcgcGAGCg -3'
miRNA:   3'- gcUAGCUGCGGUGGCUGU--------------UCUa----CUCG- -5'
12414 5' -52.3 NC_003324.1 + 40038 0.66 0.892454
Target:  5'- aGAUUG-CGCagGCUuuCGAGGUGAGCa -3'
miRNA:   3'- gCUAGCuGCGg-UGGcuGUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 32121 0.66 0.890275
Target:  5'- uCGGcCGugagcCGCCGCCGGC-AGAcagcucauuccuguUGAGCa -3'
miRNA:   3'- -GCUaGCu----GCGGUGGCUGuUCU--------------ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 5354 0.66 0.885099
Target:  5'- ---aCGGCGCC-CCGACGcugaccauGGAugucggugucaUGAGCg -3'
miRNA:   3'- gcuaGCUGCGGuGGCUGU--------UCU-----------ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 21668 0.66 0.885099
Target:  5'- uCGGcUCGACGCCG-----AAGAUGGGCg -3'
miRNA:   3'- -GCU-AGCUGCGGUggcugUUCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 4260 0.66 0.882083
Target:  5'- aGGUCGaucagauGCGCCACggcguuuccgccggUGGCAAGAUGucccGCa -3'
miRNA:   3'- gCUAGC-------UGCGGUG--------------GCUGUUCUACu---CG- -5'
12414 5' -52.3 NC_003324.1 + 50001 0.66 0.87748
Target:  5'- uGAUCGcCGCCcacaagAUCGGCAAGcgcugGGGCc -3'
miRNA:   3'- gCUAGCuGCGG------UGGCUGUUCua---CUCG- -5'
12414 5' -52.3 NC_003324.1 + 55992 0.66 0.87748
Target:  5'- gCGAUCGucgagaaGCgCACCcACAGGGcgGAGCg -3'
miRNA:   3'- -GCUAGCug-----CG-GUGGcUGUUCUa-CUCG- -5'
12414 5' -52.3 NC_003324.1 + 17587 0.66 0.869606
Target:  5'- aGAUCGACacccagauaguGCC-CCGGCGcGccguUGAGCa -3'
miRNA:   3'- gCUAGCUG-----------CGGuGGCUGUuCu---ACUCG- -5'
12414 5' -52.3 NC_003324.1 + 34151 0.66 0.869606
Target:  5'- aGggCGGaGCCGCUGGCAu--UGGGCg -3'
miRNA:   3'- gCuaGCUgCGGUGGCUGUucuACUCG- -5'
12414 5' -52.3 NC_003324.1 + 11311 0.67 0.861481
Target:  5'- --uUUGGCGUgACCGAgGcGGUGAGUa -3'
miRNA:   3'- gcuAGCUGCGgUGGCUgUuCUACUCG- -5'
12414 5' -52.3 NC_003324.1 + 45985 0.67 0.861481
Target:  5'- cCGAagCGGCGgCGCCGAaucGAgGAGCg -3'
miRNA:   3'- -GCUa-GCUGCgGUGGCUguuCUaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 1106 0.67 0.861481
Target:  5'- aGAUUGAgccCGCCGCCGuCAGc--GAGCu -3'
miRNA:   3'- gCUAGCU---GCGGUGGCuGUUcuaCUCG- -5'
12414 5' -52.3 NC_003324.1 + 1392 0.67 0.853114
Target:  5'- -cAUCGAUG-CGCCGACGGuGcUGGGCg -3'
miRNA:   3'- gcUAGCUGCgGUGGCUGUU-CuACUCG- -5'
12414 5' -52.3 NC_003324.1 + 17862 0.67 0.844513
Target:  5'- aGAUCGcCGgcaUCACCGGCAuGAUG-GCc -3'
miRNA:   3'- gCUAGCuGC---GGUGGCUGUuCUACuCG- -5'
12414 5' -52.3 NC_003324.1 + 56472 0.67 0.844513
Target:  5'- uGAUCGAUGCaGCCuugucggucGAUuggucaaacgAGGAUGAGCg -3'
miRNA:   3'- gCUAGCUGCGgUGG---------CUG----------UUCUACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.