miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12417 3' -56.6 NC_003324.1 + 52477 0.66 0.70877
Target:  5'- aUCGGcUCGACcucguagacuuuGCCGCgGCCAGacGGAUg -3'
miRNA:   3'- gAGCU-AGCUG------------UGGCGgCGGUU--CCUGg -5'
12417 3' -56.6 NC_003324.1 + 2400 0.66 0.70877
Target:  5'- -aCGAUgaUGACACCGCCaacGCCGAuGAUg -3'
miRNA:   3'- gaGCUA--GCUGUGGCGG---CGGUUcCUGg -5'
12417 3' -56.6 NC_003324.1 + 22181 0.66 0.70877
Target:  5'- gCUCGAUCGuC-UgGCgCGCCGAGaACCu -3'
miRNA:   3'- -GAGCUAGCuGuGgCG-GCGGUUCcUGG- -5'
12417 3' -56.6 NC_003324.1 + 19393 0.66 0.70877
Target:  5'- gCUCcg-CGAgCGCUacauggcuauGCCGcCCAAGGGCCg -3'
miRNA:   3'- -GAGcuaGCU-GUGG----------CGGC-GGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 49595 0.66 0.702459
Target:  5'- gCUCGAUaCGGCcgagagugccagaauGCCGCCcucGUUgcGGACCg -3'
miRNA:   3'- -GAGCUA-GCUG---------------UGGCGG---CGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 5540 0.66 0.698239
Target:  5'- -gCGggCGACGCCGCCuGCCu---ACCc -3'
miRNA:   3'- gaGCuaGCUGUGGCGG-CGGuuccUGG- -5'
12417 3' -56.6 NC_003324.1 + 23626 0.66 0.698239
Target:  5'- -cCGAgCG-CGcCCGCCGCCAcgcuguGGGGCa -3'
miRNA:   3'- gaGCUaGCuGU-GGCGGCGGU------UCCUGg -5'
12417 3' -56.6 NC_003324.1 + 30068 0.66 0.698239
Target:  5'- -cCGGUcgCGACACCgGCCGCUgcGGcuuCCu -3'
miRNA:   3'- gaGCUA--GCUGUGG-CGGCGGuuCCu--GG- -5'
12417 3' -56.6 NC_003324.1 + 24632 0.66 0.697183
Target:  5'- -aCGAUcuucCGGCACUGCUcuccaagGCCAuccGGACCc -3'
miRNA:   3'- gaGCUA----GCUGUGGCGG-------CGGUu--CCUGG- -5'
12417 3' -56.6 NC_003324.1 + 49506 0.66 0.687647
Target:  5'- --aGAUCagccaaGCGCCGCUGCCGGGcucGCCg -3'
miRNA:   3'- gagCUAGc-----UGUGGCGGCGGUUCc--UGG- -5'
12417 3' -56.6 NC_003324.1 + 49142 0.66 0.687647
Target:  5'- gCUCGAUUGAgGugaucaaCGUCGCCAccgaAGGcACCa -3'
miRNA:   3'- -GAGCUAGCUgUg------GCGGCGGU----UCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 19380 0.66 0.687647
Target:  5'- aUgGAUCGACGCCGgCGCgCGucGcGCCg -3'
miRNA:   3'- gAgCUAGCUGUGGCgGCG-GUucC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 22210 0.66 0.687647
Target:  5'- gUUGGUgGGCuuGCCGCCGCgCAccuucGGGAgCg -3'
miRNA:   3'- gAGCUAgCUG--UGGCGGCG-GU-----UCCUgG- -5'
12417 3' -56.6 NC_003324.1 + 25940 0.66 0.681267
Target:  5'- gUCGAUCGcgaucgcuccaccacGCGCCGCauccaGCUuGAGGACg -3'
miRNA:   3'- gAGCUAGC---------------UGUGGCGg----CGG-UUCCUGg -5'
12417 3' -56.6 NC_003324.1 + 31180 0.66 0.677005
Target:  5'- -cCGAgcagcagCG-CAUUGCCG-CAAGGACCg -3'
miRNA:   3'- gaGCUa------GCuGUGGCGGCgGUUCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 32422 0.66 0.677005
Target:  5'- -cCGggCGAUGCCGCUaggcagGCCAugcAGGAUCc -3'
miRNA:   3'- gaGCuaGCUGUGGCGG------CGGU---UCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 34719 0.66 0.677005
Target:  5'- gCUCu-UCGACauGCUGgaCGCCGAGGugCg -3'
miRNA:   3'- -GAGcuAGCUG--UGGCg-GCGGUUCCugG- -5'
12417 3' -56.6 NC_003324.1 + 54413 0.66 0.677005
Target:  5'- aCUCcc-CGGgACCGCUGCC--GGGCCu -3'
miRNA:   3'- -GAGcuaGCUgUGGCGGCGGuuCCUGG- -5'
12417 3' -56.6 NC_003324.1 + 53395 0.66 0.677005
Target:  5'- uUUGAUCuGGCAUCGCgGUCAcGGcGCCu -3'
miRNA:   3'- gAGCUAG-CUGUGGCGgCGGUuCC-UGG- -5'
12417 3' -56.6 NC_003324.1 + 52820 0.66 0.666321
Target:  5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3'
miRNA:   3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.