Results 1 - 20 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 52477 | 0.66 | 0.70877 |
Target: 5'- aUCGGcUCGACcucguagacuuuGCCGCgGCCAGacGGAUg -3' miRNA: 3'- gAGCU-AGCUG------------UGGCGgCGGUU--CCUGg -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 2400 | 0.66 | 0.70877 |
Target: 5'- -aCGAUgaUGACACCGCCaacGCCGAuGAUg -3' miRNA: 3'- gaGCUA--GCUGUGGCGG---CGGUUcCUGg -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 22181 | 0.66 | 0.70877 |
Target: 5'- gCUCGAUCGuC-UgGCgCGCCGAGaACCu -3' miRNA: 3'- -GAGCUAGCuGuGgCG-GCGGUUCcUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 19393 | 0.66 | 0.70877 |
Target: 5'- gCUCcg-CGAgCGCUacauggcuauGCCGcCCAAGGGCCg -3' miRNA: 3'- -GAGcuaGCU-GUGG----------CGGC-GGUUCCUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 49595 | 0.66 | 0.702459 |
Target: 5'- gCUCGAUaCGGCcgagagugccagaauGCCGCCcucGUUgcGGACCg -3' miRNA: 3'- -GAGCUA-GCUG---------------UGGCGG---CGGuuCCUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 5540 | 0.66 | 0.698239 |
Target: 5'- -gCGggCGACGCCGCCuGCCu---ACCc -3' miRNA: 3'- gaGCuaGCUGUGGCGG-CGGuuccUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 23626 | 0.66 | 0.698239 |
Target: 5'- -cCGAgCG-CGcCCGCCGCCAcgcuguGGGGCa -3' miRNA: 3'- gaGCUaGCuGU-GGCGGCGGU------UCCUGg -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 30068 | 0.66 | 0.698239 |
Target: 5'- -cCGGUcgCGACACCgGCCGCUgcGGcuuCCu -3' miRNA: 3'- gaGCUA--GCUGUGG-CGGCGGuuCCu--GG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 24632 | 0.66 | 0.697183 |
Target: 5'- -aCGAUcuucCGGCACUGCUcuccaagGCCAuccGGACCc -3' miRNA: 3'- gaGCUA----GCUGUGGCGG-------CGGUu--CCUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 49506 | 0.66 | 0.687647 |
Target: 5'- --aGAUCagccaaGCGCCGCUGCCGGGcucGCCg -3' miRNA: 3'- gagCUAGc-----UGUGGCGGCGGUUCc--UGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 49142 | 0.66 | 0.687647 |
Target: 5'- gCUCGAUUGAgGugaucaaCGUCGCCAccgaAGGcACCa -3' miRNA: 3'- -GAGCUAGCUgUg------GCGGCGGU----UCC-UGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 19380 | 0.66 | 0.687647 |
Target: 5'- aUgGAUCGACGCCGgCGCgCGucGcGCCg -3' miRNA: 3'- gAgCUAGCUGUGGCgGCG-GUucC-UGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 22210 | 0.66 | 0.687647 |
Target: 5'- gUUGGUgGGCuuGCCGCCGCgCAccuucGGGAgCg -3' miRNA: 3'- gAGCUAgCUG--UGGCGGCG-GU-----UCCUgG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 25940 | 0.66 | 0.681267 |
Target: 5'- gUCGAUCGcgaucgcuccaccacGCGCCGCauccaGCUuGAGGACg -3' miRNA: 3'- gAGCUAGC---------------UGUGGCGg----CGG-UUCCUGg -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 31180 | 0.66 | 0.677005 |
Target: 5'- -cCGAgcagcagCG-CAUUGCCG-CAAGGACCg -3' miRNA: 3'- gaGCUa------GCuGUGGCGGCgGUUCCUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 32422 | 0.66 | 0.677005 |
Target: 5'- -cCGggCGAUGCCGCUaggcagGCCAugcAGGAUCc -3' miRNA: 3'- gaGCuaGCUGUGGCGG------CGGU---UCCUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 34719 | 0.66 | 0.677005 |
Target: 5'- gCUCu-UCGACauGCUGgaCGCCGAGGugCg -3' miRNA: 3'- -GAGcuAGCUG--UGGCg-GCGGUUCCugG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 54413 | 0.66 | 0.677005 |
Target: 5'- aCUCcc-CGGgACCGCUGCC--GGGCCu -3' miRNA: 3'- -GAGcuaGCUgUGGCGGCGGuuCCUGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 53395 | 0.66 | 0.677005 |
Target: 5'- uUUGAUCuGGCAUCGCgGUCAcGGcGCCu -3' miRNA: 3'- gAGCUAG-CUGUGGCGgCGGUuCC-UGG- -5' |
|||||||
12417 | 3' | -56.6 | NC_003324.1 | + | 52820 | 0.66 | 0.666321 |
Target: 5'- -cUGGUCGACAa--CCGCCAaacAGGACa -3' miRNA: 3'- gaGCUAGCUGUggcGGCGGU---UCCUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home