miRNA display CGI


Results 41 - 59 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12422 5' -57.1 NC_003324.1 + 46440 0.71 0.339573
Target:  5'- cCUGCuUACCgcuuuccaacugagAGAcGGACGACACGGCa- -3'
miRNA:   3'- -GACG-GUGG--------------UCUuCCUGCUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 37246 0.73 0.261763
Target:  5'- cCUGCCGCggcgcaAGGAaGACGACAagcCGGCGGg -3'
miRNA:   3'- -GACGGUGg-----UCUUcCUGCUGU---GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 53010 0.74 0.248936
Target:  5'- aCUGUUuCCAGccAGGcGACGAUGCGGCGGa -3'
miRNA:   3'- -GACGGuGGUC--UUC-CUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 35161 0.75 0.213557
Target:  5'- aUGCCACCGGAGauacGGGCGACAauGCa- -3'
miRNA:   3'- gACGGUGGUCUU----CCUGCUGUgcCGcc -5'
12422 5' -57.1 NC_003324.1 + 54895 0.68 0.52798
Target:  5'- cCUGCCggucucACCGcGA---ACGGCGCGGCGGu -3'
miRNA:   3'- -GACGG------UGGU-CUuccUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 32415 0.68 0.538369
Target:  5'- aUGCCGCUAGGcaggccaugcAGGAUccggaGAUGCGGCGc -3'
miRNA:   3'- gACGGUGGUCU----------UCCUG-----CUGUGCCGCc -5'
12422 5' -57.1 NC_003324.1 + 19846 0.67 0.55935
Target:  5'- aUGCCGCCGG-GGGACGcgaACAgacCGGCc- -3'
miRNA:   3'- gACGGUGGUCuUCCUGC---UGU---GCCGcc -5'
12422 5' -57.1 NC_003324.1 + 52456 0.66 0.677005
Target:  5'- uUGCCgcgGCCAGAcGGAUGcAUGCaGGCGa -3'
miRNA:   3'- gACGG---UGGUCUuCCUGC-UGUG-CCGCc -5'
12422 5' -57.1 NC_003324.1 + 6104 0.66 0.666322
Target:  5'- aUGUCGUCGGcAGGAgcgGACugGGCGGc -3'
miRNA:   3'- gACGGUGGUCuUCCUg--CUGugCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 23025 0.66 0.655608
Target:  5'- -cGCCACCGGA--GACuggGACGCGGUu- -3'
miRNA:   3'- gaCGGUGGUCUucCUG---CUGUGCCGcc -5'
12422 5' -57.1 NC_003324.1 + 31318 0.66 0.644874
Target:  5'- gUGCgGCCGGcGGcGCuGGCGCuGGCGGg -3'
miRNA:   3'- gACGgUGGUCuUCcUG-CUGUG-CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 30078 0.66 0.644874
Target:  5'- -cGUCGCCAGAgugcaccggccGGGAuCGAUGCGGaccCGGc -3'
miRNA:   3'- gaCGGUGGUCU-----------UCCU-GCUGUGCC---GCC- -5'
12422 5' -57.1 NC_003324.1 + 36416 0.66 0.644874
Target:  5'- -aGUCAUUAuGGAcGAUGGCGCGGUGGa -3'
miRNA:   3'- gaCGGUGGU-CUUcCUGCUGUGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 25529 0.66 0.634128
Target:  5'- aUGCuCGCCaAGuGGGuCGGCugGgGCGGc -3'
miRNA:   3'- gACG-GUGG-UCuUCCuGCUGugC-CGCC- -5'
12422 5' -57.1 NC_003324.1 + 39826 0.67 0.612641
Target:  5'- gUGCCGCCGGAcaccaAGGcCGcCAugUGGUGGc -3'
miRNA:   3'- gACGGUGGUCU-----UCCuGCuGU--GCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 40547 0.67 0.569927
Target:  5'- gCUGCUucCCAGAAGcGGaGACACugauGGCGGc -3'
miRNA:   3'- -GACGGu-GGUCUUC-CUgCUGUG----CCGCC- -5'
12422 5' -57.1 NC_003324.1 + 31771 0.67 0.566748
Target:  5'- -cGUCACCAGcacGGGGauGCGGCcgaucucggauggaACGGCGGc -3'
miRNA:   3'- gaCGGUGGUC---UUCC--UGCUG--------------UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 1574 0.67 0.55935
Target:  5'- -gGCCcgGCCGGAAGcaaugccauaGACGAagAUGGCGGa -3'
miRNA:   3'- gaCGG--UGGUCUUC----------CUGCUg-UGCCGCC- -5'
12422 5' -57.1 NC_003324.1 + 43217 0.66 0.677005
Target:  5'- -aGCuCGCCGucGAGGACGGCAaccuGCGGg -3'
miRNA:   3'- gaCG-GUGGUc-UUCCUGCUGUgc--CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.