miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12431 3' -61.6 NC_003324.1 + 8243 0.66 0.45418
Target:  5'- aCGaaGCUGACGCGGCgUUUGcCUGcgaGCGGg -3'
miRNA:   3'- -GCggCGGCUGCGUCG-GAGC-GAC---UGCC- -5'
12431 3' -61.6 NC_003324.1 + 21931 0.66 0.45418
Target:  5'- gGCCGCCGAgGaGGCC-CgGCUGcGCGa -3'
miRNA:   3'- gCGGCGGCUgCgUCGGaG-CGAC-UGCc -5'
12431 3' -61.6 NC_003324.1 + 18828 0.66 0.45418
Target:  5'- gGCU-CCGGCGuCAGCaacgaGCUGAUGGa -3'
miRNA:   3'- gCGGcGGCUGC-GUCGgag--CGACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 6169 0.66 0.453245
Target:  5'- gCGCUGCCcgacgacaugcgaGAgGCAGcCCUUGCUG-CGa -3'
miRNA:   3'- -GCGGCGG-------------CUgCGUC-GGAGCGACuGCc -5'
12431 3' -61.6 NC_003324.1 + 42868 0.66 0.444877
Target:  5'- gGCUGCCGGC-CGGCC-CGCgagGAUc- -3'
miRNA:   3'- gCGGCGGCUGcGUCGGaGCGa--CUGcc -5'
12431 3' -61.6 NC_003324.1 + 14682 0.66 0.444877
Target:  5'- gGCCGCC-ACGCuaccGCCUgCGCcGcCGGc -3'
miRNA:   3'- gCGGCGGcUGCGu---CGGA-GCGaCuGCC- -5'
12431 3' -61.6 NC_003324.1 + 31246 0.66 0.435682
Target:  5'- gCGCCGCCGGcCGCAcuGCgcguuUUUGC-GGCGGc -3'
miRNA:   3'- -GCGGCGGCU-GCGU--CG-----GAGCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 5057 0.66 0.435682
Target:  5'- cCGCCGCCaaggacccgaACGCGGCCUgauaGCUuaaGCGGc -3'
miRNA:   3'- -GCGGCGGc---------UGCGUCGGAg---CGAc--UGCC- -5'
12431 3' -61.6 NC_003324.1 + 6303 0.66 0.435682
Target:  5'- gCGCUGCUGcuGCGCcucGGCCUUcaugGCUucGACGGu -3'
miRNA:   3'- -GCGGCGGC--UGCG---UCGGAG----CGA--CUGCC- -5'
12431 3' -61.6 NC_003324.1 + 20173 0.66 0.426598
Target:  5'- aCGCUGCCG--GCAGCCUCGgUcagagaGGCGc -3'
miRNA:   3'- -GCGGCGGCugCGUCGGAGCgA------CUGCc -5'
12431 3' -61.6 NC_003324.1 + 16894 0.66 0.417627
Target:  5'- uGCCGCCuuGAUGCuuGCCgucacccUGCUGGcCGGa -3'
miRNA:   3'- gCGGCGG--CUGCGu-CGGa------GCGACU-GCC- -5'
12431 3' -61.6 NC_003324.1 + 49971 0.66 0.417627
Target:  5'- aGCgCGCCGACGCAugcgaucuuuGCC-CGCcGGCu- -3'
miRNA:   3'- gCG-GCGGCUGCGU----------CGGaGCGaCUGcc -5'
12431 3' -61.6 NC_003324.1 + 2760 0.66 0.408773
Target:  5'- uGCCcuuGCCGAaGCGGCCaccgCGCUGgaaGGg -3'
miRNA:   3'- gCGG---CGGCUgCGUCGGa---GCGACug-CC- -5'
12431 3' -61.6 NC_003324.1 + 1743 0.66 0.407894
Target:  5'- cCGCCGUCaGCGuCAGCaggCGCaggccgaguuucgUGACGGg -3'
miRNA:   3'- -GCGGCGGcUGC-GUCGga-GCG-------------ACUGCC- -5'
12431 3' -61.6 NC_003324.1 + 12427 0.67 0.400036
Target:  5'- uGCUGCCGAgCGCGGCaaUGCcGACa- -3'
miRNA:   3'- gCGGCGGCU-GCGUCGgaGCGaCUGcc -5'
12431 3' -61.6 NC_003324.1 + 19538 0.67 0.400036
Target:  5'- aGCCGCUucacGCGCAuauaCUCGCcGACGGc -3'
miRNA:   3'- gCGGCGGc---UGCGUcg--GAGCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 41723 0.67 0.391419
Target:  5'- gCGCCGCCGACGagagcgggcgAGCCgUgGCaaugGugGGc -3'
miRNA:   3'- -GCGGCGGCUGCg---------UCGG-AgCGa---CugCC- -5'
12431 3' -61.6 NC_003324.1 + 21086 0.67 0.391419
Target:  5'- gGCCGCCGcggcgcgugcuGCGuCGGCUUCcacgucggGCUGGCGc -3'
miRNA:   3'- gCGGCGGC-----------UGC-GUCGGAG--------CGACUGCc -5'
12431 3' -61.6 NC_003324.1 + 2412 0.67 0.374553
Target:  5'- cCGCCaacGCCGAUGaugaAGCCgccgaCGCcGGCGGc -3'
miRNA:   3'- -GCGG---CGGCUGCg---UCGGa----GCGaCUGCC- -5'
12431 3' -61.6 NC_003324.1 + 36174 0.67 0.374553
Target:  5'- aCGCCGCCGACcugcuGCAGCaua-CUGAUGu -3'
miRNA:   3'- -GCGGCGGCUG-----CGUCGgagcGACUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.