Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12451 | 3' | -58.6 | NC_003324.1 | + | 31044 | 0.66 | 0.597561 |
Target: 5'- gUCGGCGUUcaacuccugCugACGCGCugcgacggccugauuGUCcGUGCCg -3' miRNA: 3'- -AGCCGCAG---------GugUGCGUGu--------------CAG-CGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 24798 | 0.66 | 0.596502 |
Target: 5'- cCGGCGUUCuugaggaagGCAUuguucgGCagGCGGaUCGCGCCg -3' miRNA: 3'- aGCCGCAGG---------UGUG------CG--UGUC-AGCGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 26826 | 0.66 | 0.596502 |
Target: 5'- uUUGGCG-CCGCucCGCugAGugccucgucgaUCGcCGCCa -3' miRNA: 3'- -AGCCGCaGGUGu-GCGugUC-----------AGC-GCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 27103 | 0.66 | 0.596502 |
Target: 5'- cUGGCGcagCACACcaGCGCGGUCGCucucgcucuugaGCCc -3' miRNA: 3'- aGCCGCag-GUGUG--CGUGUCAGCG------------CGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 15439 | 0.66 | 0.585921 |
Target: 5'- uUCaGCGUCCuCGCGCGCA-UCGaGCa -3' miRNA: 3'- -AGcCGCAGGuGUGCGUGUcAGCgCGg -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 50744 | 0.66 | 0.585921 |
Target: 5'- aUUGGCGcUUCGCAaccgucgcaGCGCAGauguucgUGCGCCu -3' miRNA: 3'- -AGCCGC-AGGUGUg--------CGUGUCa------GCGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 18133 | 0.66 | 0.585921 |
Target: 5'- gCGGCGUgUAUucgACGC-CGGUUuCGCCg -3' miRNA: 3'- aGCCGCAgGUG---UGCGuGUCAGcGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 28269 | 0.66 | 0.585921 |
Target: 5'- aUCGGUGgaagCUACAucgcuUGCGCGuUCGgCGCCg -3' miRNA: 3'- -AGCCGCa---GGUGU-----GCGUGUcAGC-GCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 3525 | 0.66 | 0.585921 |
Target: 5'- aUCGGCGUCaugggagcggaACcggcugcaaacgGCGCuuCGGUgGCGCCc -3' miRNA: 3'- -AGCCGCAGg----------UG------------UGCGu-GUCAgCGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 54175 | 0.66 | 0.582754 |
Target: 5'- gUCGGCGUguugcagucugugaCCACGCaGCGCgAGgcagaGCGCg -3' miRNA: 3'- -AGCCGCA--------------GGUGUG-CGUG-UCag---CGCGg -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 19466 | 0.66 | 0.575377 |
Target: 5'- aCGGCG-CgACGCGCGCcggcGUCGauCCa -3' miRNA: 3'- aGCCGCaGgUGUGCGUGu---CAGCgcGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 21825 | 0.66 | 0.569071 |
Target: 5'- cCGuCGUCCGCcuucugcaucaguuCGCGCAGcCGgGCCu -3' miRNA: 3'- aGCcGCAGGUGu-------------GCGUGUCaGCgCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 40334 | 0.66 | 0.564876 |
Target: 5'- cCGGa--CCGCACGCaaggcgGCAGUCGagcgggaGCCa -3' miRNA: 3'- aGCCgcaGGUGUGCG------UGUCAGCg------CGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 23406 | 0.66 | 0.564876 |
Target: 5'- cUCGGCuuucucGUUgGC-CGCGuCGGUgGCGCCc -3' miRNA: 3'- -AGCCG------CAGgUGuGCGU-GUCAgCGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 50622 | 0.66 | 0.554427 |
Target: 5'- cUCGGCGUCgaGCAgGUcaacGCGGgugcuggcugCGUGCCa -3' miRNA: 3'- -AGCCGCAGg-UGUgCG----UGUCa---------GCGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 47747 | 0.66 | 0.554427 |
Target: 5'- aCGGaacuGUCCA-GCGCAcCGG-CGUGCCa -3' miRNA: 3'- aGCCg---CAGGUgUGCGU-GUCaGCGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 34639 | 0.66 | 0.554427 |
Target: 5'- cUCGGCGUCCAgCAUGUcgaagaGCAc-UGUGCCc -3' miRNA: 3'- -AGCCGCAGGU-GUGCG------UGUcaGCGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 18284 | 0.67 | 0.533707 |
Target: 5'- aUCGGCcgaCGCGCGgGCAaUCGCuGCCc -3' miRNA: 3'- -AGCCGcagGUGUGCgUGUcAGCG-CGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 23899 | 0.67 | 0.533707 |
Target: 5'- aUC-GCGUCCGCAgGUuuGCcGUagaGCGCCg -3' miRNA: 3'- -AGcCGCAGGUGUgCG--UGuCAg--CGCGG- -5' |
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12451 | 3' | -58.6 | NC_003324.1 | + | 19527 | 0.67 | 0.533707 |
Target: 5'- -aGGCGUCCAucagccgcuuCACGCGCAuauaCuCGCCg -3' miRNA: 3'- agCCGCAGGU----------GUGCGUGUca--GcGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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