miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12462 3' -56.1 NC_003324.1 + 23517 0.66 0.736425
Target:  5'- gGUUCCaaccCCGGCaCGAUcggugccccacaGCGuGGCGGCg -3'
miRNA:   3'- gUAAGGc---GGCUG-GCUG------------UGCuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 47602 0.66 0.736425
Target:  5'- aGUUCCGuCCGAgcuuuaccaCGcCGCGcauGACGGCg -3'
miRNA:   3'- gUAAGGC-GGCUg--------GCuGUGCu--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 5965 0.66 0.736425
Target:  5'- ---cCCGCCGAauGGCuaugcagcGCGAGcACGGUg -3'
miRNA:   3'- guaaGGCGGCUggCUG--------UGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2418 0.66 0.736425
Target:  5'- ----aCGCCGaugaugaagccGCCGACGCc-GGCGGCu -3'
miRNA:   3'- guaagGCGGC-----------UGGCUGUGcuCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 2687 0.66 0.736425
Target:  5'- ---gCCGCuuCGGCaagGGCACGAugucGGCGGCg -3'
miRNA:   3'- guaaGGCG--GCUGg--CUGUGCU----CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 54075 0.66 0.726094
Target:  5'- --aUCgGCCGACCGGCuCGAcauccaguuuguGACGaaGCg -3'
miRNA:   3'- guaAGgCGGCUGGCUGuGCU------------CUGC--CG- -5'
12462 3' -56.1 NC_003324.1 + 2529 0.66 0.726094
Target:  5'- ----aCGCC-ACCGACgaacagGCGAcgGACGGCa -3'
miRNA:   3'- guaagGCGGcUGGCUG------UGCU--CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 23924 0.66 0.726094
Target:  5'- ----gCGCCGACaUGGCGuCGAGguucacGCGGCg -3'
miRNA:   3'- guaagGCGGCUG-GCUGU-GCUC------UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 17506 0.66 0.726094
Target:  5'- --cUCCGCgucaGACCGACgaggGCGAcgUGGCa -3'
miRNA:   3'- guaAGGCGg---CUGGCUG----UGCUcuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 43173 0.66 0.726094
Target:  5'- ---cCCGCUGGCgGAUgGCGAGACGa- -3'
miRNA:   3'- guaaGGCGGCUGgCUG-UGCUCUGCcg -5'
12462 3' -56.1 NC_003324.1 + 42259 0.66 0.726094
Target:  5'- gGUUCuCGUugaGACCuacagGGCGCGGGuCGGCa -3'
miRNA:   3'- gUAAG-GCGg--CUGG-----CUGUGCUCuGCCG- -5'
12462 3' -56.1 NC_003324.1 + 49101 0.66 0.725056
Target:  5'- cUAUUUCGCUG-CCgguGACGCGAucgccaaGAUGGCg -3'
miRNA:   3'- -GUAAGGCGGCuGG---CUGUGCU-------CUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 9382 0.66 0.715674
Target:  5'- gGUgCCGCC-ACCGAUgACGAGGucuCGGUa -3'
miRNA:   3'- gUAaGGCGGcUGGCUG-UGCUCU---GCCG- -5'
12462 3' -56.1 NC_003324.1 + 30060 0.66 0.715674
Target:  5'- uCAcgCCGCCGgucgcgacACCGGC-CGcuGCGGCu -3'
miRNA:   3'- -GUaaGGCGGC--------UGGCUGuGCucUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 29911 0.66 0.715674
Target:  5'- ---gCUGCUGGCC-AUGCuGGACGGCg -3'
miRNA:   3'- guaaGGCGGCUGGcUGUGcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 25652 0.66 0.715674
Target:  5'- ---aCCGCCGAggacaaucUCGGCGa-AGGCGGCc -3'
miRNA:   3'- guaaGGCGGCU--------GGCUGUgcUCUGCCG- -5'
12462 3' -56.1 NC_003324.1 + 19844 0.66 0.715674
Target:  5'- ---gCCGCCGGggGACGCGAacaGAcCGGCc -3'
miRNA:   3'- guaaGGCGGCUggCUGUGCU---CU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 4210 0.66 0.715674
Target:  5'- ---gUCGCCGGcuuCCGAUuCGAGAuCGGUg -3'
miRNA:   3'- guaaGGCGGCU---GGCUGuGCUCU-GCCG- -5'
12462 3' -56.1 NC_003324.1 + 21594 0.66 0.714627
Target:  5'- cCGUggCgGCCGuCCGACcuugagcaacgcgACGGGcGCGGCa -3'
miRNA:   3'- -GUAa-GgCGGCuGGCUG-------------UGCUC-UGCCG- -5'
12462 3' -56.1 NC_003324.1 + 11594 0.66 0.705174
Target:  5'- --cUCCuGCCGGa-GACugGugcGACGGCa -3'
miRNA:   3'- guaAGG-CGGCUggCUGugCu--CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.