miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12678 3' -52.4 NC_003345.1 + 9479 0.66 0.929197
Target:  5'- gAGCGucggcuuggucuuccGGGUCGUGGUaGUAucgGUCGCCa -3'
miRNA:   3'- aUCGCu--------------CUCAGCGUCAgCAU---UAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 10911 0.66 0.928636
Target:  5'- cGGgGAGGGa-GCAGUCcuuacaGUuGUCGCCg -3'
miRNA:   3'- aUCgCUCUCagCGUCAG------CAuUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 34410 0.66 0.928636
Target:  5'- gAGgGAcAGUCGCAGacCGgacUCGCCg -3'
miRNA:   3'- aUCgCUcUCAGCGUCa-GCauuAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 14636 0.66 0.928636
Target:  5'- aUAGUcGGGGUCGCAcGgccuccacUCGUGGUCGUg -3'
miRNA:   3'- -AUCGcUCUCAGCGU-C--------AGCAUUAGCGg -5'
12678 3' -52.4 NC_003345.1 + 21767 0.66 0.922873
Target:  5'- -cGUcGGAGUCaCcGUCGUcGUCGCCg -3'
miRNA:   3'- auCGcUCUCAGcGuCAGCAuUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 2138 0.66 0.903939
Target:  5'- cGGCGAGAGugacaUCGCuaAGUgGUGcgaagCGCCc -3'
miRNA:   3'- aUCGCUCUC-----AGCG--UCAgCAUua---GCGG- -5'
12678 3' -52.4 NC_003345.1 + 50324 0.66 0.903939
Target:  5'- --uCGGGGGUCGCGGUgGUAAUgGa- -3'
miRNA:   3'- aucGCUCUCAGCGUCAgCAUUAgCgg -5'
12678 3' -52.4 NC_003345.1 + 32769 0.66 0.903939
Target:  5'- -uGCGAGAGa-GCGGUCGgcGUUGaCa -3'
miRNA:   3'- auCGCUCUCagCGUCAGCauUAGCgG- -5'
12678 3' -52.4 NC_003345.1 + 11006 0.66 0.897086
Target:  5'- -cGUGAGAGcCGCuauGUCGgcguucAUCGCUc -3'
miRNA:   3'- auCGCUCUCaGCGu--CAGCau----UAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 36004 0.67 0.882587
Target:  5'- gGGaaGGAGUCGCcccGGUC-UGGUCGCUg -3'
miRNA:   3'- aUCgcUCUCAGCG---UCAGcAUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 63117 0.67 0.882587
Target:  5'- cAGcCGAGuAGUCgGCAGUagCGUAguccaccgaGUCGCCc -3'
miRNA:   3'- aUC-GCUC-UCAG-CGUCA--GCAU---------UAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 41219 0.67 0.880323
Target:  5'- cGGCGAGguuucggucuucguAGUCuCGGUCGaGGUCGUCc -3'
miRNA:   3'- aUCGCUC--------------UCAGcGUCAGCaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 57218 0.67 0.871826
Target:  5'- -uGCGGGccUCGUAGguuuccucguccaCGUAAUCGCCa -3'
miRNA:   3'- auCGCUCucAGCGUCa------------GCAUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 12588 0.67 0.858935
Target:  5'- cGGCucGGGAGUaCGCu-UCGUAgagGUCGCCg -3'
miRNA:   3'- aUCG--CUCUCA-GCGucAGCAU---UAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 42955 0.68 0.833163
Target:  5'- aUAGUGA-AGUCGCGGUUGUccucuuUCGCa -3'
miRNA:   3'- -AUCGCUcUCAGCGUCAGCAuu----AGCGg -5'
12678 3' -52.4 NC_003345.1 + 62803 0.68 0.825051
Target:  5'- cGGaCGAGAGgcgcuuguugauuggCGUGGUCGUGAuaccgagcuUCGCCc -3'
miRNA:   3'- aUC-GCUCUCa--------------GCGUCAGCAUU---------AGCGG- -5'
12678 3' -52.4 NC_003345.1 + 45389 0.68 0.824139
Target:  5'- aUAGUucGAGAagGUCGUcGUCGcGGUCGCCc -3'
miRNA:   3'- -AUCG--CUCU--CAGCGuCAGCaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 54572 0.69 0.805498
Target:  5'- -uGUGGGGGUCGCuGUCGUGcggagaaaccucGaUGCCg -3'
miRNA:   3'- auCGCUCUCAGCGuCAGCAU------------UaGCGG- -5'
12678 3' -52.4 NC_003345.1 + 12403 0.69 0.805498
Target:  5'- gAGUGGGAGUCGCuGaCGgagGAcaaCGCCa -3'
miRNA:   3'- aUCGCUCUCAGCGuCaGCa--UUa--GCGG- -5'
12678 3' -52.4 NC_003345.1 + 34397 0.69 0.795902
Target:  5'- cGGUGAGcuGGUCGCugaGGUCGUccAGUUGCg -3'
miRNA:   3'- aUCGCUC--UCAGCG---UCAGCA--UUAGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.