miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 17081 0.66 0.47836
Target:  5'- gGUCggCCAGugcccgccCGGCCGCCucgGCGggcuccUCGGGGCc -3'
miRNA:   3'- -UAGa-GGUU--------GUCGGCGG---CGC------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 50959 0.66 0.47836
Target:  5'- cUCgggcgCCAGC-GCCGCCGCc---GGGCu -3'
miRNA:   3'- uAGa----GGUUGuCGGCGGCGcaguCCCG- -5'
12772 5' -59.5 NC_003387.1 + 9002 0.66 0.47836
Target:  5'- -gCUCCcGCAuGCCGCCGuCGagCAccuggcGGGCg -3'
miRNA:   3'- uaGAGGuUGU-CGGCGGC-GCa-GU------CCCG- -5'
12772 5' -59.5 NC_003387.1 + 51417 0.66 0.47836
Target:  5'- cGUCgUCGAC-GUCGCC-CGcCAGGGCg -3'
miRNA:   3'- -UAGaGGUUGuCGGCGGcGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 30748 0.66 0.47836
Target:  5'- cUCgUCgGGCAGCa-CCGUGUC-GGGCg -3'
miRNA:   3'- uAG-AGgUUGUCGgcGGCGCAGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 48471 0.66 0.458576
Target:  5'- aAUCUCUuGCggcguagugaGGCCGUCGCGgc-GGGCc -3'
miRNA:   3'- -UAGAGGuUG----------UCGGCGGCGCaguCCCG- -5'
12772 5' -59.5 NC_003387.1 + 24299 0.66 0.458576
Target:  5'- ---aCCAugAGCCGCCGCagcagCcGGGUc -3'
miRNA:   3'- uagaGGUugUCGGCGGCGca---GuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 11442 0.66 0.458576
Target:  5'- cUCgugcCCGcgcuGCAGCuCGCCGC--CGGGGCg -3'
miRNA:   3'- uAGa---GGU----UGUCG-GCGGCGcaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 11268 0.66 0.448849
Target:  5'- -----gGGCAGUCaggGCgGCGUCAGGGCc -3'
miRNA:   3'- uagaggUUGUCGG---CGgCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 12358 0.66 0.439237
Target:  5'- cAUCaCCAAC-GCCGCCGCGaCGGcccGCa -3'
miRNA:   3'- -UAGaGGUUGuCGGCGGCGCaGUCc--CG- -5'
12772 5' -59.5 NC_003387.1 + 845 0.66 0.439237
Target:  5'- uUCUCggCGACGGCCuUCGCGaucacCGGGGCc -3'
miRNA:   3'- uAGAG--GUUGUCGGcGGCGCa----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 22152 0.66 0.439237
Target:  5'- -aCUCgCGGCacggcgcguaccGGCCGCgGCGgcgguccaugUCGGGGCg -3'
miRNA:   3'- uaGAG-GUUG------------UCGGCGgCGC----------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 44014 0.66 0.439237
Target:  5'- uGUCgUCgAGCGGCuCGUCGaCGUCGGucGGCa -3'
miRNA:   3'- -UAG-AGgUUGUCG-GCGGC-GCAGUC--CCG- -5'
12772 5' -59.5 NC_003387.1 + 52212 0.66 0.429744
Target:  5'- gAUCUUCAaccGCGGUCGCCaCG-CGGGcGCg -3'
miRNA:   3'- -UAGAGGU---UGUCGGCGGcGCaGUCC-CG- -5'
12772 5' -59.5 NC_003387.1 + 43465 0.67 0.420372
Target:  5'- ---aCCGGCGGCgaCGUCcUGUCGGGGCg -3'
miRNA:   3'- uagaGGUUGUCG--GCGGcGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 2033 0.67 0.418512
Target:  5'- ---gCCGACGGCCGCCGuCGccgagcuggccgCGGuGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGGC-GCa-----------GUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 27535 0.67 0.411125
Target:  5'- -gCUgCcGCGGCgGCgGCGcCGGGGCc -3'
miRNA:   3'- uaGAgGuUGUCGgCGgCGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 1651 0.67 0.411125
Target:  5'- ----aCGACGGCCGCCaCGUCGaggagguguGGGCc -3'
miRNA:   3'- uagagGUUGUCGGCGGcGCAGU---------CCCG- -5'
12772 5' -59.5 NC_003387.1 + 16918 0.67 0.402005
Target:  5'- cAUCgcgCCGACGG-CGCCGaggcacaGcUCGGGGCu -3'
miRNA:   3'- -UAGa--GGUUGUCgGCGGCg------C-AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41965 0.67 0.402005
Target:  5'- cUCguaCCGGCGaucGCgGCCGUGUCAGcGGUc -3'
miRNA:   3'- uAGa--GGUUGU---CGgCGGCGCAGUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.