miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 52384 0.7 0.239023
Target:  5'- -cCGCGCgCACGCGgaucuuggCGUGCGUgucGCCGGg -3'
miRNA:   3'- uaGCGCG-GUGUGCa-------GCGCGCG---UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 52225 0.71 0.215908
Target:  5'- --gGuCGCCACGCGg-GCGCGCAUCGc -3'
miRNA:   3'- uagC-GCGGUGUGCagCGCGCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 51975 1.06 0.000476
Target:  5'- cAUCGCGCCACACGUCGCGCGCACCGAc -3'
miRNA:   3'- -UAGCGCGGUGUGCAGCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51802 0.66 0.416367
Target:  5'- cGUCGUGUUAgGCGUCuugauGCacagcgcgaacacgaGCGCGCCGAg -3'
miRNA:   3'- -UAGCGCGGUgUGCAG-----CG---------------CGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51616 0.69 0.284407
Target:  5'- -aCG-GCCGaaccCGCGcUCGCGgGCACCGAa -3'
miRNA:   3'- uaGCgCGGU----GUGC-AGCGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51521 0.77 0.075475
Target:  5'- --gGCGCCGCGuuCGUCGCGgGCACCa- -3'
miRNA:   3'- uagCGCGGUGU--GCAGCGCgCGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 51426 0.66 0.421859
Target:  5'- cGUCGC-CCGCcaggGCGUCGagGCGCAUCa- -3'
miRNA:   3'- -UAGCGcGGUG----UGCAGCg-CGCGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 50535 0.69 0.257688
Target:  5'- --aGcCGCCACAUGUCgGCGaccaagGCGCCGAg -3'
miRNA:   3'- uagC-GCGGUGUGCAG-CGCg-----CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 50246 0.66 0.440473
Target:  5'- --gGCGCCGUACGUCaGCGCcgggcgguGCACCu- -3'
miRNA:   3'- uagCGCGGUGUGCAG-CGCG--------CGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 49949 0.69 0.257047
Target:  5'- cGUCGCGCCGugcucgauCACGUCGgugaccuCGCGCACg-- -3'
miRNA:   3'- -UAGCGCGGU--------GUGCAGC-------GCGCGUGgcu -5'
12773 3' -60.7 NC_003387.1 + 49335 0.68 0.313268
Target:  5'- gAUCGCGCgCAagcugaGCGUCGgGUacaGCACCGu -3'
miRNA:   3'- -UAGCGCG-GUg-----UGCAGCgCG---CGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 48883 0.66 0.431107
Target:  5'- cGUCgGCGCCGCcuacCGCGCGCcCUGAc -3'
miRNA:   3'- -UAG-CGCGGUGugcaGCGCGCGuGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48730 0.66 0.430177
Target:  5'- -gUGCGCCGCGacgaGUccaugacCGCGCGgguCGCCGAg -3'
miRNA:   3'- uaGCGCGGUGUg---CA-------GCGCGC---GUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48705 0.73 0.138042
Target:  5'- cUCGCGCUugGCGUUGuCGaGCACCGu -3'
miRNA:   3'- uAGCGCGGugUGCAGC-GCgCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 48633 0.69 0.29142
Target:  5'- --gGCGCCGCGgGUCGCGaGCAUgCGGc -3'
miRNA:   3'- uagCGCGGUGUgCAGCGCgCGUG-GCU- -5'
12773 3' -60.7 NC_003387.1 + 48549 0.7 0.251337
Target:  5'- -cCGCGCCGagguCACGUgccagGCGUGCAUCGAc -3'
miRNA:   3'- uaGCGCGGU----GUGCAg----CGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48472 0.69 0.270782
Target:  5'- -cCGCuGUCGCagACGUUGUGCGgCGCCGAc -3'
miRNA:   3'- uaGCG-CGGUG--UGCAGCGCGC-GUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48131 0.66 0.440473
Target:  5'- -aCGUGgcagacCCGCGCGcagCGCGC-CACCGAg -3'
miRNA:   3'- uaGCGC------GGUGUGCa--GCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 47593 0.72 0.175402
Target:  5'- --aGCGCCcCuCGUCGCGUGCGgCGAu -3'
miRNA:   3'- uagCGCGGuGuGCAGCGCGCGUgGCU- -5'
12773 3' -60.7 NC_003387.1 + 47560 0.69 0.284407
Target:  5'- cGUCG-GCCGCAC-UCGCGUGUcggugaagcucgACCGAu -3'
miRNA:   3'- -UAGCgCGGUGUGcAGCGCGCG------------UGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.