miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 5' -56.6 NC_003387.1 + 35839 0.66 0.62874
Target:  5'- gCGUCGGCuauguCGugcaucGCCUgggcgUGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGu----GCua----CGGA-----ACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 27902 0.66 0.62874
Target:  5'- aG-CGcACACGcgGCCUUgaccgGCGGCGUGGg -3'
miRNA:   3'- gCaGC-UGUGCuaCGGAA-----CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 25420 0.66 0.606674
Target:  5'- aCGgCGACGCGGcucucaaggGCCgccagUGCGGCGUu- -3'
miRNA:   3'- -GCaGCUGUGCUa--------CGGa----ACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 44602 0.66 0.59567
Target:  5'- aGUCGA-GCGAcGCCgucgggccGUGGCGCGAg -3'
miRNA:   3'- gCAGCUgUGCUaCGGaa------CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 46009 0.66 0.59567
Target:  5'- aGUCGACgguGAacUGCCc-GCGGUGCAAg -3'
miRNA:   3'- gCAGCUGug-CU--ACGGaaCGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 3821 0.66 0.59567
Target:  5'- gCG-CGACaACGAUcGUCaggGCGGCGCGGu -3'
miRNA:   3'- -GCaGCUG-UGCUA-CGGaa-CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 45169 0.66 0.584697
Target:  5'- aGUgaUGACGCGAUcgGCCaggGCGGCaGCAGu -3'
miRNA:   3'- gCA--GCUGUGCUA--CGGaa-CGCCG-CGUU- -5'
12773 5' -56.6 NC_003387.1 + 48273 0.66 0.584697
Target:  5'- gGUCGGCuCG--GCCUU-CGGCGCGGg -3'
miRNA:   3'- gCAGCUGuGCuaCGGAAcGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 4140 0.66 0.584697
Target:  5'- gCGUUcACACGAucacugcgugUGCCUgGCGGUGCc- -3'
miRNA:   3'- -GCAGcUGUGCU----------ACGGAaCGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 1595 0.66 0.584697
Target:  5'- gGUCGACAUGucgcacgGCCUggcgauuucgGuCGGCGCGu -3'
miRNA:   3'- gCAGCUGUGCua-----CGGAa---------C-GCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 21751 0.66 0.583602
Target:  5'- uG-CGACACGGUGCUguggggaUUccugggcagccaGCGGCGCAc -3'
miRNA:   3'- gCaGCUGUGCUACGG-------AA------------CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 21923 0.66 0.573764
Target:  5'- -aUCGACAuugUGGUGCUcgGCGGCGgGGg -3'
miRNA:   3'- gcAGCUGU---GCUACGGaaCGCCGCgUU- -5'
12773 5' -56.6 NC_003387.1 + 26556 0.66 0.573764
Target:  5'- gCGaCGACAUGAcGcCCUUGCGG-GCGGu -3'
miRNA:   3'- -GCaGCUGUGCUaC-GGAACGCCgCGUU- -5'
12773 5' -56.6 NC_003387.1 + 23893 0.66 0.573764
Target:  5'- aCGUCGgcgagcACACGAUcGUCUUgGUGGCGUg- -3'
miRNA:   3'- -GCAGC------UGUGCUA-CGGAA-CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 48759 0.67 0.562879
Target:  5'- aCGUCacgcACGCGGUGCU---CGGCGCAGc -3'
miRNA:   3'- -GCAGc---UGUGCUACGGaacGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 32832 0.67 0.556374
Target:  5'- aCGUCcuggcucaggcccaGCACGGUGUCUUGCagGGCGCc- -3'
miRNA:   3'- -GCAGc-------------UGUGCUACGGAACG--CCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 11593 0.67 0.556374
Target:  5'- cCGUCGGCGCGcUGCCacuugauccggucgUGCaGCGCc- -3'
miRNA:   3'- -GCAGCUGUGCuACGGa-------------ACGcCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 21245 0.67 0.545582
Target:  5'- gGUCGGCAUGGUGCgccgcgacgaggaguCgggcaagGUGGCGCAc -3'
miRNA:   3'- gCAGCUGUGCUACG---------------Gaa-----CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 29688 0.67 0.541285
Target:  5'- aCGUCGACGuggccgagguCGAggcGCUcgGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGU----------GCUa--CGGaaCGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 1249 0.67 0.541285
Target:  5'- gGUCuGGCguucGCGGUGUCgguUGCGGUGCGg -3'
miRNA:   3'- gCAG-CUG----UGCUACGGa--ACGCCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.