Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 35839 | 0.66 | 0.62874 |
Target: 5'- gCGUCGGCuauguCGugcaucGCCUgggcgUGCGGCGCc- -3' miRNA: 3'- -GCAGCUGu----GCua----CGGA-----ACGCCGCGuu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 27902 | 0.66 | 0.62874 |
Target: 5'- aG-CGcACACGcgGCCUUgaccgGCGGCGUGGg -3' miRNA: 3'- gCaGC-UGUGCuaCGGAA-----CGCCGCGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 25420 | 0.66 | 0.606674 |
Target: 5'- aCGgCGACGCGGcucucaaggGCCgccagUGCGGCGUu- -3' miRNA: 3'- -GCaGCUGUGCUa--------CGGa----ACGCCGCGuu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 44602 | 0.66 | 0.59567 |
Target: 5'- aGUCGA-GCGAcGCCgucgggccGUGGCGCGAg -3' miRNA: 3'- gCAGCUgUGCUaCGGaa------CGCCGCGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 46009 | 0.66 | 0.59567 |
Target: 5'- aGUCGACgguGAacUGCCc-GCGGUGCAAg -3' miRNA: 3'- gCAGCUGug-CU--ACGGaaCGCCGCGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 3821 | 0.66 | 0.59567 |
Target: 5'- gCG-CGACaACGAUcGUCaggGCGGCGCGGu -3' miRNA: 3'- -GCaGCUG-UGCUA-CGGaa-CGCCGCGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 45169 | 0.66 | 0.584697 |
Target: 5'- aGUgaUGACGCGAUcgGCCaggGCGGCaGCAGu -3' miRNA: 3'- gCA--GCUGUGCUA--CGGaa-CGCCG-CGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 48273 | 0.66 | 0.584697 |
Target: 5'- gGUCGGCuCG--GCCUU-CGGCGCGGg -3' miRNA: 3'- gCAGCUGuGCuaCGGAAcGCCGCGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 4140 | 0.66 | 0.584697 |
Target: 5'- gCGUUcACACGAucacugcgugUGCCUgGCGGUGCc- -3' miRNA: 3'- -GCAGcUGUGCU----------ACGGAaCGCCGCGuu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 1595 | 0.66 | 0.584697 |
Target: 5'- gGUCGACAUGucgcacgGCCUggcgauuucgGuCGGCGCGu -3' miRNA: 3'- gCAGCUGUGCua-----CGGAa---------C-GCCGCGUu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 21751 | 0.66 | 0.583602 |
Target: 5'- uG-CGACACGGUGCUguggggaUUccugggcagccaGCGGCGCAc -3' miRNA: 3'- gCaGCUGUGCUACGG-------AA------------CGCCGCGUu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 21923 | 0.66 | 0.573764 |
Target: 5'- -aUCGACAuugUGGUGCUcgGCGGCGgGGg -3' miRNA: 3'- gcAGCUGU---GCUACGGaaCGCCGCgUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 26556 | 0.66 | 0.573764 |
Target: 5'- gCGaCGACAUGAcGcCCUUGCGG-GCGGu -3' miRNA: 3'- -GCaGCUGUGCUaC-GGAACGCCgCGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 23893 | 0.66 | 0.573764 |
Target: 5'- aCGUCGgcgagcACACGAUcGUCUUgGUGGCGUg- -3' miRNA: 3'- -GCAGC------UGUGCUA-CGGAA-CGCCGCGuu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 48759 | 0.67 | 0.562879 |
Target: 5'- aCGUCacgcACGCGGUGCU---CGGCGCAGc -3' miRNA: 3'- -GCAGc---UGUGCUACGGaacGCCGCGUU- -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 32832 | 0.67 | 0.556374 |
Target: 5'- aCGUCcuggcucaggcccaGCACGGUGUCUUGCagGGCGCc- -3' miRNA: 3'- -GCAGc-------------UGUGCUACGGAACG--CCGCGuu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 11593 | 0.67 | 0.556374 |
Target: 5'- cCGUCGGCGCGcUGCCacuugauccggucgUGCaGCGCc- -3' miRNA: 3'- -GCAGCUGUGCuACGGa-------------ACGcCGCGuu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 21245 | 0.67 | 0.545582 |
Target: 5'- gGUCGGCAUGGUGCgccgcgacgaggaguCgggcaagGUGGCGCAc -3' miRNA: 3'- gCAGCUGUGCUACG---------------Gaa-----CGCCGCGUu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 29688 | 0.67 | 0.541285 |
Target: 5'- aCGUCGACGuggccgagguCGAggcGCUcgGCGGCGCc- -3' miRNA: 3'- -GCAGCUGU----------GCUa--CGGaaCGCCGCGuu -5' |
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12773 | 5' | -56.6 | NC_003387.1 | + | 1249 | 0.67 | 0.541285 |
Target: 5'- gGUCuGGCguucGCGGUGUCgguUGCGGUGCGg -3' miRNA: 3'- gCAG-CUG----UGCUACGGa--ACGCCGCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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