miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 39290 0.69 0.450029
Target:  5'- gCAGGuuGcCGAgguaguucaCACCGGCGAGCgCCGa -3'
miRNA:   3'- aGUCCugCaGCU---------GUGGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 39219 0.66 0.615537
Target:  5'- gUCGGGcagugggaGCGgguacCGGCGCCGGgCGAGgCCGu -3'
miRNA:   3'- -AGUCC--------UGCa----GCUGUGGCC-GCUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 39203 0.73 0.25603
Target:  5'- cCAGGccgACGcugucagCGACuccACCGGCGAACCCGc -3'
miRNA:   3'- aGUCC---UGCa------GCUG---UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 39127 0.67 0.537762
Target:  5'- gCGGGGCugccaGACugCGGCGAccagccgacguccuGCCCGu -3'
miRNA:   3'- aGUCCUGcag--CUGugGCCGCU--------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 36892 0.68 0.459729
Target:  5'- aCGGGcaccGCGUCGGCgucacaACCGGCGGcgacgcggcACCCc -3'
miRNA:   3'- aGUCC----UGCAGCUG------UGGCCGCU---------UGGGu -5'
12774 3' -57.4 NC_003387.1 + 34817 0.68 0.47647
Target:  5'- gUCGGGGgcgucgagaauguuCGUCGACGgcCCGcGCGGGCCUu -3'
miRNA:   3'- -AGUCCU--------------GCAGCUGU--GGC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 34467 0.67 0.530457
Target:  5'- --uGGAuCGUCGACAUggCGGCGGAUgCGg -3'
miRNA:   3'- aguCCU-GCAGCUGUG--GCCGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 34343 0.66 0.583303
Target:  5'- gCAGccgaucGACGUCGACGuggucgaggUCGGCaAACCCAa -3'
miRNA:   3'- aGUC------CUGCAGCUGU---------GGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 34117 0.7 0.385487
Target:  5'- aUCGGcGGCGUCGACGUCGcggugcGCGAACUCGa -3'
miRNA:   3'- -AGUC-CUGCAGCUGUGGC------CGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 32287 0.71 0.350633
Target:  5'- -gGGGGCG-CGaggaGCACCGGCGGcugcacaACCCGa -3'
miRNA:   3'- agUCCUGCaGC----UGUGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 31048 0.66 0.626321
Target:  5'- cCAGGGCGUCGGCGaacacgugcUCGGCc-GCCg- -3'
miRNA:   3'- aGUCCUGCAGCUGU---------GGCCGcuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 31031 0.69 0.430974
Target:  5'- cCGGGGCGgcggccagcaCGGCACCGGCGccgauGGCaCCGg -3'
miRNA:   3'- aGUCCUGCa---------GCUGUGGCCGC-----UUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 30129 0.67 0.561995
Target:  5'- --uGGGCGaguaGACGauGGCGAACCCGc -3'
miRNA:   3'- aguCCUGCag--CUGUggCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 28603 0.66 0.594019
Target:  5'- cCGGGAuagcUGcCGACGCCcgcaugccaGGCGAugCCGa -3'
miRNA:   3'- aGUCCU----GCaGCUGUGG---------CCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 28047 0.66 0.594019
Target:  5'- gUCGGGauaGCGcgagucacccUCGGCGCUGGCGAcCUCGc -3'
miRNA:   3'- -AGUCC---UGC----------AGCUGUGGCCGCUuGGGU- -5'
12774 3' -57.4 NC_003387.1 + 27857 0.69 0.440443
Target:  5'- gCGGcGccACGaUCGACACCGGCgcggucgagcagGAGCCCGg -3'
miRNA:   3'- aGUC-C--UGC-AGCUGUGGCCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 27192 0.67 0.529416
Target:  5'- aUCGGGuugccgaACGU-GACACCGGCGAucaGCUUg -3'
miRNA:   3'- -AGUCC-------UGCAgCUGUGGCCGCU---UGGGu -5'
12774 3' -57.4 NC_003387.1 + 26330 0.66 0.582233
Target:  5'- aUCAGcauugcgguagccGACGUCaGCACCGGauaGAACCa- -3'
miRNA:   3'- -AGUC-------------CUGCAGcUGUGGCCg--CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 25754 0.72 0.275994
Target:  5'- cUCGGcauGAUGuUCGGCACCGGC-AACCCGc -3'
miRNA:   3'- -AGUC---CUGC-AGCUGUGGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25578 0.69 0.440443
Target:  5'- cCGGcGGCGcCGACcCCGGCGGgcacggccucgACCCGc -3'
miRNA:   3'- aGUC-CUGCaGCUGuGGCCGCU-----------UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.