miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 31430 0.66 0.527528
Target:  5'- uGCUCGACGgccUCGaCGACGaCGCggugCGCCa -3'
miRNA:   3'- -UGGGCUGC---AGCaGCUGCaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 22612 0.66 0.527528
Target:  5'- cGCCCaAgGUCacUUGGCGgcccuggcCGCCCGCCg -3'
miRNA:   3'- -UGGGcUgCAGc-AGCUGCa-------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 46653 0.66 0.527528
Target:  5'- cCCCGGCgGUCGUCaugguGCGcUCGaaCCUGCCc -3'
miRNA:   3'- uGGGCUG-CAGCAGc----UGC-AGC--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 11509 0.66 0.524515
Target:  5'- uGCCU-ACGaUCGUCGGCcugcguGUCGCCCuguucgcgcaccagGCCg -3'
miRNA:   3'- -UGGGcUGC-AGCAGCUG------CAGCGGG--------------CGG- -5'
12775 3' -60.3 NC_003387.1 + 1296 0.66 0.517511
Target:  5'- -aCCGGCGcaguUCGaggCGGCGccgcaggCGCUCGCCg -3'
miRNA:   3'- ugGGCUGC----AGCa--GCUGCa------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51778 0.66 0.517511
Target:  5'- cGCCCGACugGUgGcUgGGCGUCGaUCGCCc -3'
miRNA:   3'- -UGGGCUG--CAgC-AgCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 19588 0.66 0.517511
Target:  5'- uGCUCGGCGUCGacgugUGGCaGUCGUuccuugaCGCCg -3'
miRNA:   3'- -UGGGCUGCAGCa----GCUG-CAGCGg------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 36781 0.66 0.517511
Target:  5'- cACUCGGCGcUgGcCGACG-CGCaCGCCa -3'
miRNA:   3'- -UGGGCUGC-AgCaGCUGCaGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34145 0.66 0.515516
Target:  5'- aACUCGACGagcaccagGGCGUCGCCCucgGCCu -3'
miRNA:   3'- -UGGGCUGCagcag---CUGCAGCGGG---CGG- -5'
12775 3' -60.3 NC_003387.1 + 9407 0.66 0.50757
Target:  5'- uGCCCGGCGcugUGaUCGcguaGUCGCCCaGCa -3'
miRNA:   3'- -UGGGCUGCa--GC-AGCug--CAGCGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 1611 0.66 0.50757
Target:  5'- gGCCUGGCGauuUCgGUCGGCGcgUGCUgGCUg -3'
miRNA:   3'- -UGGGCUGC---AG-CAGCUGCa-GCGGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 36147 0.66 0.50757
Target:  5'- uCCCGGCGUUGcCGcCGUUGCgCaCCu -3'
miRNA:   3'- uGGGCUGCAGCaGCuGCAGCGgGcGG- -5'
12775 3' -60.3 NC_003387.1 + 45598 0.66 0.50757
Target:  5'- uACCCGACGaCGagauccguugccUCGGCGagcaGCUCGCUu -3'
miRNA:   3'- -UGGGCUGCaGC------------AGCUGCag--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35318 0.66 0.50757
Target:  5'- aGCCUGACGgCGUCGcCGgUCGCgggaauuuCgGCCa -3'
miRNA:   3'- -UGGGCUGCaGCAGCuGC-AGCG--------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 29172 0.66 0.50757
Target:  5'- gACCCGACGaUCGagGACGguaucgacaUgGCCCGa- -3'
miRNA:   3'- -UGGGCUGC-AGCagCUGC---------AgCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 47537 0.66 0.50757
Target:  5'- gACCguuaCGGCGagGUCGugcuCGUCGgCCGCa -3'
miRNA:   3'- -UGG----GCUGCagCAGCu---GCAGCgGGCGg -5'
12775 3' -60.3 NC_003387.1 + 40676 0.66 0.497712
Target:  5'- cACgCCGGUGaacUUGUCGACGaUGCCCuGCCa -3'
miRNA:   3'- -UG-GGCUGC---AGCAGCUGCaGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 29007 0.66 0.497712
Target:  5'- uGCgCCGA-GUCGUUcgccgccugGGCGUUGCUCGCg -3'
miRNA:   3'- -UG-GGCUgCAGCAG---------CUGCAGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 39502 0.66 0.497712
Target:  5'- uGCUCGGCGucggucagcuugUCGUUGACcUUGCCgCGCUu -3'
miRNA:   3'- -UGGGCUGC------------AGCAGCUGcAGCGG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 7813 0.66 0.497712
Target:  5'- aGCCCGGCGaCG-CGAuaCGgauaugcgCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCU--GCa-------GCGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.