miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12778 5' -53.3 NC_003387.1 + 49943 0.66 0.839203
Target:  5'- cUCGa--ACGucGCGCCGUgcucgaucACGUCGGUg -3'
miRNA:   3'- -AGUguaUGCucCGCGGCA--------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 26064 0.66 0.839203
Target:  5'- cCACAUucGCGAGGCugcGCCcgGCGUgacguauuucCAGCa -3'
miRNA:   3'- aGUGUA--UGCUCCG---CGGcaUGCA----------GUCG- -5'
12778 5' -53.3 NC_003387.1 + 21222 0.66 0.839203
Target:  5'- -aGCGUGCG-GGCGCaggGCGauccggUCGGCa -3'
miRNA:   3'- agUGUAUGCuCCGCGgcaUGC------AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 11451 0.66 0.839203
Target:  5'- gUCGCcguCGAGGgGgCGcACGgUCAGCg -3'
miRNA:   3'- -AGUGuauGCUCCgCgGCaUGC-AGUCG- -5'
12778 5' -53.3 NC_003387.1 + 4703 0.66 0.839203
Target:  5'- gCACGUGcCGAuccacGGCGCCGacuCGUCgaAGUg -3'
miRNA:   3'- aGUGUAU-GCU-----CCGCGGCau-GCAG--UCG- -5'
12778 5' -53.3 NC_003387.1 + 26121 0.66 0.839203
Target:  5'- uUCGCcgcCGAGGCGuuGUcagcACGagcCAGCa -3'
miRNA:   3'- -AGUGuauGCUCCGCggCA----UGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 6987 0.66 0.839203
Target:  5'- cCACuuGUGC-AGGCGCCGcagaAUGUCGcGCa -3'
miRNA:   3'- aGUG--UAUGcUCCGCGGCa---UGCAGU-CG- -5'
12778 5' -53.3 NC_003387.1 + 23689 0.66 0.838313
Target:  5'- -gGCGUGagccgaGGGGCGCUGUuugcugacuucggACGggcgCAGCg -3'
miRNA:   3'- agUGUAUg-----CUCCGCGGCA-------------UGCa---GUCG- -5'
12778 5' -53.3 NC_003387.1 + 3873 0.66 0.830208
Target:  5'- gCGCAccaggGCGuGcaCGCCGUGCGUCGcGCc -3'
miRNA:   3'- aGUGUa----UGCuCc-GCGGCAUGCAGU-CG- -5'
12778 5' -53.3 NC_003387.1 + 22991 0.66 0.830208
Target:  5'- cUCGCccGCGuAGcUGCCGU-CGUCGGCc -3'
miRNA:   3'- -AGUGuaUGC-UCcGCGGCAuGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 30566 0.66 0.824709
Target:  5'- cCGCGgcCGGuacGCGCCGUgccgcgagugcggguACGUCGGCc -3'
miRNA:   3'- aGUGUauGCUc--CGCGGCA---------------UGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 17317 0.66 0.821002
Target:  5'- aUCACAccgcugaccUGCGGuGGCGCuucugCGUGCcgcaagGUCGGCa -3'
miRNA:   3'- -AGUGU---------AUGCU-CCGCG-----GCAUG------CAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 51581 0.66 0.821002
Target:  5'- gCGCAUgcACGcAGGCGCCGagcacaccgUGCGcccUAGCg -3'
miRNA:   3'- aGUGUA--UGC-UCCGCGGC---------AUGCa--GUCG- -5'
12778 5' -53.3 NC_003387.1 + 22243 0.66 0.821002
Target:  5'- uUCACcuauaACG-GGCaGCUcUACGUCGGCg -3'
miRNA:   3'- -AGUGua---UGCuCCG-CGGcAUGCAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 51823 0.66 0.811592
Target:  5'- gCACAgcgcgaacACGAGcGCGCCGagcaggUACGUCuuGCc -3'
miRNA:   3'- aGUGUa-------UGCUC-CGCGGC------AUGCAGu-CG- -5'
12778 5' -53.3 NC_003387.1 + 24116 0.66 0.811592
Target:  5'- -gGCAUGCG-GGCGUCGg----CAGCu -3'
miRNA:   3'- agUGUAUGCuCCGCGGCaugcaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 30690 0.66 0.811592
Target:  5'- gCACcgGCgGGGGCGUuuuCGUGCGcCuGCg -3'
miRNA:   3'- aGUGuaUG-CUCCGCG---GCAUGCaGuCG- -5'
12778 5' -53.3 NC_003387.1 + 50461 0.66 0.80199
Target:  5'- gCACcu-CGGGGCGCCc-ACG-CAGCc -3'
miRNA:   3'- aGUGuauGCUCCGCGGcaUGCaGUCG- -5'
12778 5' -53.3 NC_003387.1 + 1112 0.66 0.80199
Target:  5'- gUCACAUgaGCGAcgcuagGGCGCacgguGUGC-UCGGCg -3'
miRNA:   3'- -AGUGUA--UGCU------CCGCGg----CAUGcAGUCG- -5'
12778 5' -53.3 NC_003387.1 + 37571 0.66 0.80199
Target:  5'- gCGCGU-CGAGGUaGgUGUACG-CGGCa -3'
miRNA:   3'- aGUGUAuGCUCCG-CgGCAUGCaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.