miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 33591 0.66 0.47468
Target:  5'- gUGCgCGA-CGaaGAU-CCCGCCGAGGUg -3'
miRNA:   3'- -ACGaGCUaGCc-CUAcGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 2278 0.66 0.472724
Target:  5'- gGCUCGAcgUCGuccucgcugGCguaCGCCGAGGCg -3'
miRNA:   3'- aCGAGCU--AGCccua-----CGg--GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 14773 0.66 0.468825
Target:  5'- gUGCUCGAccgcugucucgaacUUGGcGUGCCCGgCGgugccgagccacgcGGGCa -3'
miRNA:   3'- -ACGAGCU--------------AGCCcUACGGGCgGC--------------UCCG- -5'
12782 3' -60.3 NC_003387.1 + 4835 0.66 0.45531
Target:  5'- cGCUUG-UCGGcGAcgUGCaCGCCGAgauGGCg -3'
miRNA:   3'- aCGAGCuAGCC-CU--ACGgGCGGCU---CCG- -5'
12782 3' -60.3 NC_003387.1 + 34516 0.66 0.45531
Target:  5'- cGC-CGGUCGuc--GCgUCGCCGAGGCg -3'
miRNA:   3'- aCGaGCUAGCccuaCG-GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 34757 0.66 0.451487
Target:  5'- uUGCUUGAccgacgaccacacCGGGGucUGCCCGUCcucGGGCg -3'
miRNA:   3'- -ACGAGCUa------------GCCCU--ACGGGCGGc--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 29396 0.66 0.445786
Target:  5'- -cCUCGAUCuc---GCCCGCCGGGcGCa -3'
miRNA:   3'- acGAGCUAGcccuaCGGGCGGCUC-CG- -5'
12782 3' -60.3 NC_003387.1 + 43924 0.66 0.445786
Target:  5'- gGCgCGAgcugagCGGGAaucaggucGCCCGCCGccGCa -3'
miRNA:   3'- aCGaGCUa-----GCCCUa-------CGGGCGGCucCG- -5'
12782 3' -60.3 NC_003387.1 + 15753 0.66 0.445786
Target:  5'- aGCaUGAUCGGGGcguacaGCCUGCgGuuGGCg -3'
miRNA:   3'- aCGaGCUAGCCCUa-----CGGGCGgCu-CCG- -5'
12782 3' -60.3 NC_003387.1 + 32079 0.66 0.445786
Target:  5'- gUGUUCGc-CGGGAgcggcacauUGCCCGCCGGu-- -3'
miRNA:   3'- -ACGAGCuaGCCCU---------ACGGGCGGCUccg -5'
12782 3' -60.3 NC_003387.1 + 5222 0.66 0.440126
Target:  5'- cUGCggggUGAUCGGGugaaccgcgacccGCUgGCCGAcGGCg -3'
miRNA:   3'- -ACGa---GCUAGCCCua-----------CGGgCGGCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 24871 0.66 0.440126
Target:  5'- gGCUCGAccUCGGGcgguggcugcgcccUGUCCaCCGAcGGCa -3'
miRNA:   3'- aCGAGCU--AGCCCu-------------ACGGGcGGCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 3601 0.66 0.436375
Target:  5'- gGCgCGA-CGGGugacagcggGUGCgCGUCGAGGUg -3'
miRNA:   3'- aCGaGCUaGCCC---------UACGgGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 14684 0.66 0.436375
Target:  5'- cGCcCGAUCGGGgcGCCguCGCCGcgauccguugcGGuGCa -3'
miRNA:   3'- aCGaGCUAGCCCuaCGG--GCGGC-----------UC-CG- -5'
12782 3' -60.3 NC_003387.1 + 23943 0.66 0.436375
Target:  5'- gGCUCGAcCGGGGcacgGCgacaugggCCGCUuguGGGGCg -3'
miRNA:   3'- aCGAGCUaGCCCUa---CG--------GGCGG---CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 35075 0.66 0.427079
Target:  5'- uUGCccuugUCGGUCGGGccgagGCUCGCCuucaacgguucGAGGUc -3'
miRNA:   3'- -ACG-----AGCUAGCCCua---CGGGCGG-----------CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 10674 0.66 0.427079
Target:  5'- gGCUgCGAccacggccgccUCGGcGGUGgCCGCCGguaucaagccGGGCg -3'
miRNA:   3'- aCGA-GCU-----------AGCC-CUACgGGCGGC----------UCCG- -5'
12782 3' -60.3 NC_003387.1 + 33377 0.66 0.427079
Target:  5'- cGCgggCGGaUGGGAcG-CCGCCGcAGGCa -3'
miRNA:   3'- aCGa--GCUaGCCCUaCgGGCGGC-UCCG- -5'
12782 3' -60.3 NC_003387.1 + 30918 0.66 0.427079
Target:  5'- aGCUCccGUCGGGcUGCaCCGgCCGucGCa -3'
miRNA:   3'- aCGAGc-UAGCCCuACG-GGC-GGCucCG- -5'
12782 3' -60.3 NC_003387.1 + 30414 0.66 0.427079
Target:  5'- cUGCcCGAgcugUCGGG-UGaaaCCgagGCCGAGGCg -3'
miRNA:   3'- -ACGaGCU----AGCCCuACg--GG---CGGCUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.