Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 33591 | 0.66 | 0.47468 |
Target: 5'- gUGCgCGA-CGaaGAU-CCCGCCGAGGUg -3' miRNA: 3'- -ACGaGCUaGCc-CUAcGGGCGGCUCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 2278 | 0.66 | 0.472724 |
Target: 5'- gGCUCGAcgUCGuccucgcugGCguaCGCCGAGGCg -3' miRNA: 3'- aCGAGCU--AGCccua-----CGg--GCGGCUCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 14773 | 0.66 | 0.468825 |
Target: 5'- gUGCUCGAccgcugucucgaacUUGGcGUGCCCGgCGgugccgagccacgcGGGCa -3' miRNA: 3'- -ACGAGCU--------------AGCCcUACGGGCgGC--------------UCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 4835 | 0.66 | 0.45531 |
Target: 5'- cGCUUG-UCGGcGAcgUGCaCGCCGAgauGGCg -3' miRNA: 3'- aCGAGCuAGCC-CU--ACGgGCGGCU---CCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 34516 | 0.66 | 0.45531 |
Target: 5'- cGC-CGGUCGuc--GCgUCGCCGAGGCg -3' miRNA: 3'- aCGaGCUAGCccuaCG-GGCGGCUCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 34757 | 0.66 | 0.451487 |
Target: 5'- uUGCUUGAccgacgaccacacCGGGGucUGCCCGUCcucGGGCg -3' miRNA: 3'- -ACGAGCUa------------GCCCU--ACGGGCGGc--UCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 29396 | 0.66 | 0.445786 |
Target: 5'- -cCUCGAUCuc---GCCCGCCGGGcGCa -3' miRNA: 3'- acGAGCUAGcccuaCGGGCGGCUC-CG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 43924 | 0.66 | 0.445786 |
Target: 5'- gGCgCGAgcugagCGGGAaucaggucGCCCGCCGccGCa -3' miRNA: 3'- aCGaGCUa-----GCCCUa-------CGGGCGGCucCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 15753 | 0.66 | 0.445786 |
Target: 5'- aGCaUGAUCGGGGcguacaGCCUGCgGuuGGCg -3' miRNA: 3'- aCGaGCUAGCCCUa-----CGGGCGgCu-CCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 32079 | 0.66 | 0.445786 |
Target: 5'- gUGUUCGc-CGGGAgcggcacauUGCCCGCCGGu-- -3' miRNA: 3'- -ACGAGCuaGCCCU---------ACGGGCGGCUccg -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 5222 | 0.66 | 0.440126 |
Target: 5'- cUGCggggUGAUCGGGugaaccgcgacccGCUgGCCGAcGGCg -3' miRNA: 3'- -ACGa---GCUAGCCCua-----------CGGgCGGCU-CCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 24871 | 0.66 | 0.440126 |
Target: 5'- gGCUCGAccUCGGGcgguggcugcgcccUGUCCaCCGAcGGCa -3' miRNA: 3'- aCGAGCU--AGCCCu-------------ACGGGcGGCU-CCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 3601 | 0.66 | 0.436375 |
Target: 5'- gGCgCGA-CGGGugacagcggGUGCgCGUCGAGGUg -3' miRNA: 3'- aCGaGCUaGCCC---------UACGgGCGGCUCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 14684 | 0.66 | 0.436375 |
Target: 5'- cGCcCGAUCGGGgcGCCguCGCCGcgauccguugcGGuGCa -3' miRNA: 3'- aCGaGCUAGCCCuaCGG--GCGGC-----------UC-CG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 23943 | 0.66 | 0.436375 |
Target: 5'- gGCUCGAcCGGGGcacgGCgacaugggCCGCUuguGGGGCg -3' miRNA: 3'- aCGAGCUaGCCCUa---CG--------GGCGG---CUCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 35075 | 0.66 | 0.427079 |
Target: 5'- uUGCccuugUCGGUCGGGccgagGCUCGCCuucaacgguucGAGGUc -3' miRNA: 3'- -ACG-----AGCUAGCCCua---CGGGCGG-----------CUCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 10674 | 0.66 | 0.427079 |
Target: 5'- gGCUgCGAccacggccgccUCGGcGGUGgCCGCCGguaucaagccGGGCg -3' miRNA: 3'- aCGA-GCU-----------AGCC-CUACgGGCGGC----------UCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 33377 | 0.66 | 0.427079 |
Target: 5'- cGCgggCGGaUGGGAcG-CCGCCGcAGGCa -3' miRNA: 3'- aCGa--GCUaGCCCUaCgGGCGGC-UCCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 30918 | 0.66 | 0.427079 |
Target: 5'- aGCUCccGUCGGGcUGCaCCGgCCGucGCa -3' miRNA: 3'- aCGAGc-UAGCCCuACG-GGC-GGCucCG- -5' |
|||||||
12782 | 3' | -60.3 | NC_003387.1 | + | 30414 | 0.66 | 0.427079 |
Target: 5'- cUGCcCGAgcugUCGGG-UGaaaCCgagGCCGAGGCg -3' miRNA: 3'- -ACGaGCU----AGCCCuACg--GG---CGGCUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home