miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 30693 0.66 0.639381
Target:  5'- -cGCCcacggaauGUCGACG-CCGCGCUcuAGCGu -3'
miRNA:   3'- uaCGG--------CAGCUGCuGGCGCGGu-UUGCu -5'
12782 5' -56.9 NC_003387.1 + 30093 0.66 0.639381
Target:  5'- -aGUCGUCGGCGGgCGgccagggcCGCCAAGUGAc -3'
miRNA:   3'- uaCGGCAGCUGCUgGC--------GCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 31082 0.66 0.639381
Target:  5'- -cGCgGUCGACGAgCUGaCGCUcGACGc -3'
miRNA:   3'- uaCGgCAGCUGCU-GGC-GCGGuUUGCu -5'
12782 5' -56.9 NC_003387.1 + 26701 0.66 0.639381
Target:  5'- cUGCuCGUCGACG-CCgucguGCGCgGcGCGAg -3'
miRNA:   3'- uACG-GCAGCUGCuGG-----CGCGgUuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 28227 0.66 0.639381
Target:  5'- -aGCCG-CGACGGCuCGaccgagcagauCGUCGAGCGGu -3'
miRNA:   3'- uaCGGCaGCUGCUG-GC-----------GCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 37869 0.66 0.63829
Target:  5'- -cGCC-UCGACGAugcuugaacuugaCCGCGUCAAccccgaggGCGAc -3'
miRNA:   3'- uaCGGcAGCUGCU-------------GGCGCGGUU--------UGCU- -5'
12782 5' -56.9 NC_003387.1 + 16754 0.66 0.628471
Target:  5'- -cGCCGcCGAgggccuccuCGACCGCgGCCuucGCGGc -3'
miRNA:   3'- uaCGGCaGCU---------GCUGGCG-CGGuu-UGCU- -5'
12782 5' -56.9 NC_003387.1 + 47650 0.66 0.628471
Target:  5'- -cGCCGUUaGugGGuuGCGCCAGuuGCc- -3'
miRNA:   3'- uaCGGCAG-CugCUggCGCGGUU--UGcu -5'
12782 5' -56.9 NC_003387.1 + 33856 0.66 0.628471
Target:  5'- gAUGCuCG-CGACGAgCGCcUCGGGCGAc -3'
miRNA:   3'- -UACG-GCaGCUGCUgGCGcGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 18938 0.66 0.628471
Target:  5'- -gGgUGUCGGCaccaGCCGgGCCAAACGc -3'
miRNA:   3'- uaCgGCAGCUGc---UGGCgCGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 10700 0.66 0.628471
Target:  5'- cUGgCGcUCGGCGACCaucacgGCCAGGCGGc -3'
miRNA:   3'- uACgGC-AGCUGCUGGcg----CGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 7834 0.66 0.628471
Target:  5'- uAUGCgCGccCGGCGGCUGCGUCAGcuCGGc -3'
miRNA:   3'- -UACG-GCa-GCUGCUGGCGCGGUUu-GCU- -5'
12782 5' -56.9 NC_003387.1 + 36881 0.66 0.625198
Target:  5'- uGUGCuCGcCGACGggcACCGCGUCGgcgucacaaccggcGGCGAc -3'
miRNA:   3'- -UACG-GCaGCUGC---UGGCGCGGU--------------UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 46741 0.66 0.617564
Target:  5'- gAUGCaCGgCGGCaaccuGGCCGgGUCGAGCGAc -3'
miRNA:   3'- -UACG-GCaGCUG-----CUGGCgCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 32196 0.66 0.617564
Target:  5'- cUGCgCGUCGucaccgacgagcGCGacGCCGCGCUgcGCGAg -3'
miRNA:   3'- uACG-GCAGC------------UGC--UGGCGCGGuuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 30561 0.66 0.617564
Target:  5'- -cGCCGcCG-CGGCCgguacGCGCCGugccGCGAg -3'
miRNA:   3'- uaCGGCaGCuGCUGG-----CGCGGUu---UGCU- -5'
12782 5' -56.9 NC_003387.1 + 714 0.66 0.617564
Target:  5'- -cGUCGUCGAgGGCCGacagGUCGGGCa- -3'
miRNA:   3'- uaCGGCAGCUgCUGGCg---CGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 42932 0.66 0.617564
Target:  5'- -cGUCGUCGaaagcGCGACC-CGCCAGAa-- -3'
miRNA:   3'- uaCGGCAGC-----UGCUGGcGCGGUUUgcu -5'
12782 5' -56.9 NC_003387.1 + 2304 0.66 0.617564
Target:  5'- -cGCCGaggCGACGAuCUGCcGCCcGACGu -3'
miRNA:   3'- uaCGGCa--GCUGCU-GGCG-CGGuUUGCu -5'
12782 5' -56.9 NC_003387.1 + 26589 0.66 0.617564
Target:  5'- -gGCCGcgcgagCGGCGACggaCGCGCCGAccugGCGc -3'
miRNA:   3'- uaCGGCa-----GCUGCUG---GCGCGGUU----UGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.