Results 1 - 20 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12782 | 5' | -56.9 | NC_003387.1 | + | 130 | 0.69 | 0.430838 |
Target: 5'- gAUGCgGUCGcccucGCGAuCCGCGCCGc-CGAg -3' miRNA: 3'- -UACGgCAGC-----UGCU-GGCGCGGUuuGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 282 | 0.69 | 0.459918 |
Target: 5'- -cGCCgGUCGAgugcacgaucaCGACCGaGCCGGugGAg -3' miRNA: 3'- uaCGG-CAGCU-----------GCUGGCgCGGUUugCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 458 | 0.69 | 0.421387 |
Target: 5'- -cGCCG-CGGCGGCCGaCGgCGAccggcGCGAg -3' miRNA: 3'- uaCGGCaGCUGCUGGC-GCgGUU-----UGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 489 | 0.67 | 0.531478 |
Target: 5'- cUGCuCGUCG-CGAUgCGCGCCcgcguGGCGAc -3' miRNA: 3'- uACG-GCAGCuGCUG-GCGCGGu----UUGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 714 | 0.66 | 0.617564 |
Target: 5'- -cGUCGUCGAgGGCCGacagGUCGGGCa- -3' miRNA: 3'- uaCGGCAGCUgCUGGCg---CGGUUUGcu -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 751 | 0.71 | 0.334159 |
Target: 5'- gAUGCgGUCGGCcACCGCGgCA-GCGAc -3' miRNA: 3'- -UACGgCAGCUGcUGGCGCgGUuUGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 1472 | 0.67 | 0.552691 |
Target: 5'- -gGUCGUCGAgGGCCaggGCGUCGAcguCGAg -3' miRNA: 3'- uaCGGCAGCUgCUGG---CGCGGUUu--GCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 1700 | 0.66 | 0.583872 |
Target: 5'- -gGCgGUCGACugGAUCGCugagcggGCCGGGCGGc -3' miRNA: 3'- uaCGgCAGCUG--CUGGCG-------CGGUUUGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 2027 | 0.81 | 0.074354 |
Target: 5'- gGUGCCGcCGACGGCCGCcgucGCCGAGCu- -3' miRNA: 3'- -UACGGCaGCUGCUGGCG----CGGUUUGcu -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 2223 | 0.68 | 0.510567 |
Target: 5'- -cGCCGgucaGGCGGCCaGCGUCAgccaguugccGACGAc -3' miRNA: 3'- uaCGGCag--CUGCUGG-CGCGGU----------UUGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 2304 | 0.66 | 0.617564 |
Target: 5'- -cGCCGaggCGACGAuCUGCcGCCcGACGu -3' miRNA: 3'- uaCGGCa--GCUGCU-GGCG-CGGuUUGCu -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 2354 | 0.72 | 0.310702 |
Target: 5'- -cGCCGUCGGCGuCgaGCGCCAcguacGCGGu -3' miRNA: 3'- uaCGGCAGCUGCuGg-CGCGGUu----UGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 3505 | 0.67 | 0.531478 |
Target: 5'- cUGCUGUCGaACGaACCGgCGCCAGu--- -3' miRNA: 3'- uACGGCAGC-UGC-UGGC-GCGGUUugcu -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 3537 | 0.75 | 0.185844 |
Target: 5'- -aGCaaCGUCGACGGCCGCcGCCugcGCGAc -3' miRNA: 3'- uaCG--GCAGCUGCUGGCG-CGGuu-UGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 3646 | 0.74 | 0.229456 |
Target: 5'- -cGCCGUCGAcCGGCuCGUGCCccggcuGAGCGGc -3' miRNA: 3'- uaCGGCAGCU-GCUG-GCGCGG------UUUGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 3890 | 0.67 | 0.563393 |
Target: 5'- -cGCCGU--GCG-UCGCGCCGAGCa- -3' miRNA: 3'- uaCGGCAgcUGCuGGCGCGGUUUGcu -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 3936 | 0.71 | 0.353841 |
Target: 5'- -cGCCG-CGGCGaucagcggcgagcugGCUGCGCCGAGCa- -3' miRNA: 3'- uaCGGCaGCUGC---------------UGGCGCGGUUUGcu -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 4395 | 0.67 | 0.531478 |
Target: 5'- -cGCCGUCGACuACUGgcagaacgucgaCGCCGAGCu- -3' miRNA: 3'- uaCGGCAGCUGcUGGC------------GCGGUUUGcu -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 4483 | 0.66 | 0.584954 |
Target: 5'- -gGCCG-CGGcCGACCGgGCgCGAcACGAu -3' miRNA: 3'- uaCGGCaGCU-GCUGGCgCG-GUU-UGCU- -5' |
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12782 | 5' | -56.9 | NC_003387.1 | + | 4856 | 0.72 | 0.310702 |
Target: 5'- gGUGUCGUCGuAgGACCgcuGCGCCAuaAGCGGu -3' miRNA: 3'- -UACGGCAGC-UgCUGG---CGCGGU--UUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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