miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 22090 0.66 0.766956
Target:  5'- aGCG-CGUGggGcacgUACGGCGCCa---- -3'
miRNA:   3'- -CGCuGUACuuCa---GUGCCGCGGccuag -5'
12783 5' -54.6 NC_003387.1 + 7824 0.66 0.766956
Target:  5'- gGCGGCc-GAGGUCGCccGGCGCgcaggCGGaAUCg -3'
miRNA:   3'- -CGCUGuaCUUCAGUG--CCGCG-----GCC-UAG- -5'
12783 5' -54.6 NC_003387.1 + 34490 0.66 0.756691
Target:  5'- uGCGGCcuacGAGUacgcccgccgcUGCGGCGCCGcGAUCc -3'
miRNA:   3'- -CGCUGuac-UUCA-----------GUGCCGCGGC-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 45233 0.66 0.756691
Target:  5'- gGCGugGUcGGAGUCGauGgGCUGGAc- -3'
miRNA:   3'- -CGCugUA-CUUCAGUgcCgCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 48063 0.66 0.746299
Target:  5'- gGCGGCGUc-GGcCGCuuGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUAcuUCaGUG--CCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 2397 0.66 0.746299
Target:  5'- gGCGGCcugaAUGAAGUCGgGGCGC---AUCg -3'
miRNA:   3'- -CGCUG----UACUUCAGUgCCGCGgccUAG- -5'
12783 5' -54.6 NC_003387.1 + 766 0.66 0.745253
Target:  5'- cGCGGCAgcGAcGUCG-GGCagcuucucagcgaGCCGGGUCa -3'
miRNA:   3'- -CGCUGUa-CUuCAGUgCCG-------------CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 3840 0.66 0.725176
Target:  5'- gGCGGCGc--GGUagGCGGCGCCGacGAUCc -3'
miRNA:   3'- -CGCUGUacuUCAg-UGCCGCGGC--CUAG- -5'
12783 5' -54.6 NC_003387.1 + 46730 0.67 0.714468
Target:  5'- gGCGA-GUGGAcgaugCACGGCggcaaccugGCCGGGUCg -3'
miRNA:   3'- -CGCUgUACUUca---GUGCCG---------CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 14914 0.67 0.703679
Target:  5'- aCGACGUGAcGgcugCGCGGCuaCCGGcgCa -3'
miRNA:   3'- cGCUGUACUuCa---GUGCCGc-GGCCuaG- -5'
12783 5' -54.6 NC_003387.1 + 18205 0.67 0.703679
Target:  5'- -gGGCAgcccGAGGaUCGCGGCGCCGcagCg -3'
miRNA:   3'- cgCUGUa---CUUC-AGUGCCGCGGCcuaG- -5'
12783 5' -54.6 NC_003387.1 + 25182 0.67 0.697171
Target:  5'- gGCGGuCAgcGAGGcucauacaggcaaccUCGCGGCggcgGCCGGAUCu -3'
miRNA:   3'- -CGCU-GUa-CUUC---------------AGUGCCG----CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 52527 0.67 0.692819
Target:  5'- cGCGGCAau--GUCGCGG-GCCGaGUCg -3'
miRNA:   3'- -CGCUGUacuuCAGUGCCgCGGCcUAG- -5'
12783 5' -54.6 NC_003387.1 + 1516 0.67 0.692819
Target:  5'- cCGACGUGcAGGcUCAgcaccuCGGUGCCgaGGAUCg -3'
miRNA:   3'- cGCUGUAC-UUC-AGU------GCCGCGG--CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 21953 0.67 0.692819
Target:  5'- gGCGGCA-GgcGUCuGCGGCGCUGu-UCa -3'
miRNA:   3'- -CGCUGUaCuuCAG-UGCCGCGGCcuAG- -5'
12783 5' -54.6 NC_003387.1 + 48620 0.67 0.692819
Target:  5'- cCGACuu---GUaCACGGCGCCgcGGGUCg -3'
miRNA:   3'- cGCUGuacuuCA-GUGCCGCGG--CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 30245 0.67 0.681901
Target:  5'- uUGGCcgGGucGUCGggguCGGCGCCgGGGUCg -3'
miRNA:   3'- cGCUGuaCUu-CAGU----GCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 36008 0.67 0.681901
Target:  5'- uCGACGgcGAGGUCGUGGUGCgccgcaagCGGAUCa -3'
miRNA:   3'- cGCUGUa-CUUCAGUGCCGCG--------GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 8172 0.67 0.670934
Target:  5'- -aGAagcccuUGAAGUCuuucgagcccuGCGGCGCCGGGc- -3'
miRNA:   3'- cgCUgu----ACUUCAG-----------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 48827 0.67 0.670934
Target:  5'- gGCGGuCA--GGGUCgggcaGCGGCGCCGGuUCc -3'
miRNA:   3'- -CGCU-GUacUUCAG-----UGCCGCGGCCuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.